Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44980 1018 / 0 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT2G45000 347 / 3e-105 EMB2766 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1) AT3G06010 345 / 3e-101 ATCHR12 Homeotic gene regulator (.1) AT3G06400 339 / 1e-99 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 338 / 3e-99 CHR17 chromatin remodeling factor17 (.1.2) AT2G13370 344 / 2e-98 CHR5 chromatin remodeling 5 (.1) AT5G19310 336 / 3e-98 Homeotic gene regulator (.1) AT5G66750 309 / 4e-91 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G25170 319 / 8e-91 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 314 / 5e-90 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042886 [exp] 436 / 5e-139 AT2G45000 410 / 2e-133 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1) Lus10010522 [exp] 351 / 1e-103 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 350 / 5e-103 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10009711 [exp] 352 / 2e-101 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 352 / 3e-101 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10033967 [exp] 346 / 3e-99 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10041735 [exp] 323 / 1e-95 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10038363 [exp] 324 / 1e-91 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10041019 [exp] 319 / 1e-90 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G056700 [exp] 1134 / 0 AT2G44980 1149 / 0.0 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) Potri.014G057000 [exp] 356 / 1e-107 AT2G45000 371 / 1e-116 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1) Potri.010G021400 [exp] 339 / 2e-99 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 337 / 7e-99 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 333 / 5e-97 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.001G253400 [exp] 339 / 6e-97 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.008G149900 [exp] 333 / 6e-97 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.009G047800 [exp] 338 / 2e-96 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.019G129900 [exp] 323 / 2e-96 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.001G123400 [exp] 334 / 4e-95 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF05064 [flax] [poplar] Nsp1_C Nsp1-like C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10028186 pacid=23166477 polypeptide=Lus10028186 locus=Lus10028186.g ID=Lus10028186.BGIv1.0 annot-version=v1.0 ATGAACTACGAGCAGAGATTAGTAACAGCGGCGACGATCATACTCGACTCCGACGCACAAGTCACCTCTTCTGCCGAGGATTTGGCCATAAACACTCGAG AAATCGGAGTTGAAGCGACGTTGAAGCCTCACCAGGTCGAAGGAGTTGCATGGCTTATACGGCGGTATCTTCTCGGTGTTAATGTTATTTTAGGGGACGA GGTATGTGCTGTGCGTGAACCTTCAATTGCCAGAGCCCCTTATTTCTGTCCAACTGTCTTTCTAATGGGACTCGGTAAAACCATGCAAGCTATCTCTTTC CTTGGCTACTTGAAATTTCAGCAGAAGTCACCTGGCCCATTTCTTGTTCTGTGTCCTCTAAGTGTGACAGATGGTTGGGTGTCGGAGATGGCCAAATTCA CTCCCATGCTTACCGTCCTCAGATATCTGGGTGATAAAGAGCACAGGCGTTCCATAAGAAAGACAATTTATGAGCACGTAGATCAACAGACTTCTTCATC TAATGTAACATTGCTTCCTTTTGACGTGCTGTTGACGACTTATGACATAGCACTGATGGATCAAGATTTTCTTTCTCAAATTCCTTGGTCCTATGCAATC ATTGACGAAGCTCAAAGACTGAAAAATCCTTCCAGTGTCCTGTATGGCGTTCTTAGCAATCGATTTCTCATGCCAAGACGGTTGTTGATGACTGGCACTC CCATTCAGAATAATCTTACTGAACTCTGGTCTTTGATGCATTTCTGTATGCCTTCAGTATTTGGGATGCTACAACAGTTCCTTTCCACATTCAAAGAAGC TGCTGATGCTTTGCCAGGTCTTGATAAAACCGAAGTCAAGGAGCAATTTAAGTCTCTGAAGCATATACTGAAGGCCTTCATGCTTCGACGGACAAAGGCT AAGCTTATTGAGTGTGGAAACTTAGTACTGCCACCATTAACTGAGATTACTGTGATGACTCCACTAGCTAGTCTGCAGAAGAAAGTATATTCTTCAATCT TGAGGAAAGAGCTTCCAAAACTTCTTGCACTGACATCTACAGCTTCTAACCAGCCATCACTGCAAAATATTGTGATACAACTAAGAAAAGCTTGTAGCCA TCCTTACCTTTTTCCTGGAATTGAACCTGAGCCCTATGAAGAAGGAGAACACTTGATCCAGGCATGTGGGAAACTCGTGATATTGGATCGCATACTCCAA ATGCTACATGCTTCCGGGCATCGAGTCCTTCTCTTCGCCCAGATGACCCGTACACTAGATATTTTACAGGATTACTTGGAGTTGCGTCGGTACACATATG AGCGTCTTGATGGTTCAATTCGGGCTGAAGAGCGGTTTGCTGCAATACGAAGTTTCAGTCAACAACCGCGGTTGCAAAGTTCTGCAACTGATGGCAGTAC TGCTTTTGTTTTCATGATTTCTACAAGAGCAGGGGGTGTTGGCTTGAATCTTGTGGCTGCAGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAA GTTGACAAGCAGGCACTGCAAAGAGCACACCGGATTGGTCAAATGAATCACGTGTTATGTATAAACTTGGTTACCAGACGGACAGTGGAGGAGGTTATTA TGCGAAGGGCAGAAAGGAAATTGCAGCTTAGTCATAATGTTGTTGGAGATGATCTGAAGCATGAAGGCAAAGAAACTGGAGCTGATACTGGTGACATGCG ATCTATCATATTGGGGTTATACATGTTTGATCCTTCAGATATGCATGATGGAAAGTTAGATGAACTAAGCGAGGAAGAGTTGGATGCTGTTGCAGAGAAA GTAGTTGCCATCCGCCACAAAAACAAATTGGGGAAGGCTGAGGAGAAATTCGAACTCAATTCAGTTGAGCAGAGGAGCAAACTTGATCCTATTATTGGGA AAGATTCTTCTTCAATCAGCTATGACCCCGGTCTTGATGAGGCATCATATCTTTCTTGGGTTGAAAACTTTAGAAAACAGTCAGAATCAACTTCCAGCCC AATATTGGATTTAGAGAAGAGGAATAATGTGTTCCAGAAGAGGCATGATAATCTCGAGGAAGCTCGGAAGAAAGCTGAAGAAAAGAAGTTAGCGAAGTGG GAAGCCCACGGATATCATTCACTGTCTCTCAATGACCCGAATGCTCCTGAAAATGACGATATATTGTCAGATTCAGGATCTGTTCACTTTGTTTCAGGAG ATTGTACACATCCAGAACATGTTTGCCCATCCAAGCCCACTGTTATATTCAGTTGTATGGACGATTCTGGAAATTGGGGGCGAGGAGGATTATTTGATGC ACTGGCTAGACTTTCTTCTGCTATCCCAGATGCTTATCAACGGGCTTCGGAATTTGACGACTTACACCTTGGGGATCTGCACTTGATAAAAATAAATGAG GGCAATGATGGAGGAGAGGGGAATACTAATAATTCTCAGTGGGTGGGTTTGGGCGTCGTACAGTCGTATAGTCCAAGACGAAAAGTTGCTCGCAGCGACA TATCCATCCCTGAGTTGGAGCGCTGCTTATCCAAGGCAGCATTTGCAGCAGCACAACACTCGGGTGCTGCTTCATCTTCAAAAGCTCTAACAAGTTCCTC TACAACTACAACTGCTCCCACATCATTGTCTCTTATTCCTTCTAGCAGCGGGACCAGTTCCAGTGCCACCACTACCGTAACCACTGAACCTAAGTTGCCA TCCGAGATAGCTGGAAAAACTGTCGAAGAGATCATAAAAGAATGGAATTCAGAGCTGCAAGAGCGCACTGGAAAGTTCCGAAAGCAAGCCACGGCAATAA CTGAATGGGACAAGAGAATATTGCAAAACCGTGATGCTCTTCTGAGGCTTGAGATTGAAGTGGCAAAAGTGGTCGAGACTCAAGCTAACTTGGAACGGCA ATTGGAGTTAATTGAGACTCATCAGCAAGAGGTTGACAAGGCTTTGGAGAGCATGGAAAATGAGACTGAACGTATATACAAGGATGAGCGCGGGGTGCTT CTGAATGATGAAGCTGCTTCGACAAGGGATGCGATGTATGAACAAGCTGAGATTGTGGAGAGGGAATTGGAACAGACGACAGAACAGATCAAGTCTGTTA TAGATAACCTAAATGCCAGCCAGGGTGGTGAGCTTGATCCGATAGATGGGATGACACCACTGGACGTCGTTGTTCGAATATTGAACAATCAATTGAGTTC GTTAATGTGGATTGATGAGAAGGCGGAAGAGTTCTCTTCAAGGATCCAAAAGGTTGCTTCGGAAGGTTCTACTGTAGCTGATAGGGAACCAGTGGGTCCA AGATTGTGGTTGTCTTGA
AA sequence Show only first row Show all	>Lus10028186 pacid=23166477 polypeptide=Lus10028186 locus=Lus10028186.g ID=Lus10028186.BGIv1.0 annot-version=v1.0 MNYEQRLVTAATIILDSDAQVTSSAEDLAINTREIGVEATLKPHQVEGVAWLIRRYLLGVNVILGDEVCAVREPSIARAPYFCPTVFLMGLGKTMQAISF LGYLKFQQKSPGPFLVLCPLSVTDGWVSEMAKFTPMLTVLRYLGDKEHRRSIRKTIYEHVDQQTSSSNVTLLPFDVLLTTYDIALMDQDFLSQIPWSYAI IDEAQRLKNPSSVLYGVLSNRFLMPRRLLMTGTPIQNNLTELWSLMHFCMPSVFGMLQQFLSTFKEAADALPGLDKTEVKEQFKSLKHILKAFMLRRTKA KLIECGNLVLPPLTEITVMTPLASLQKKVYSSILRKELPKLLALTSTASNQPSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLIQACGKLVILDRILQ MLHASGHRVLLFAQMTRTLDILQDYLELRRYTYERLDGSIRAEERFAAIRSFSQQPRLQSSATDGSTAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQ VDKQALQRAHRIGQMNHVLCINLVTRRTVEEVIMRRAERKLQLSHNVVGDDLKHEGKETGADTGDMRSIILGLYMFDPSDMHDGKLDELSEEELDAVAEK VVAIRHKNKLGKAEEKFELNSVEQRSKLDPIIGKDSSSISYDPGLDEASYLSWVENFRKQSESTSSPILDLEKRNNVFQKRHDNLEEARKKAEEKKLAKW EAHGYHSLSLNDPNAPENDDILSDSGSVHFVSGDCTHPEHVCPSKPTVIFSCMDDSGNWGRGGLFDALARLSSAIPDAYQRASEFDDLHLGDLHLIKINE GNDGGEGNTNNSQWVGLGVVQSYSPRRKVARSDISIPELERCLSKAAFAAAQHSGAASSSKALTSSSTTTTAPTSLSLIPSSSGTSSSATTTVTTEPKLP SEIAGKTVEEIIKEWNSELQERTGKFRKQATAITEWDKRILQNRDALLRLEIEVAKVVETQANLERQLELIETHQQEVDKALESMENETERIYKDERGVL LNDEAASTRDAMYEQAEIVERELEQTTEQIKSVIDNLNASQGGELDPIDGMTPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKVASEGSTVADREPVGP RLWLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	0	1
AT1G73020			unknown protein		Lus10009732 [exp]	3.9	0.8850
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	4.5	0.8681
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	5.3	0.8818
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	6.2	0.8736
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	9.5	0.8560
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	9.6	0.8070
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	11.0	0.8603
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	11.4	0.8098
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	13.5	0.8550
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	13.9	0.8169

Compare expression of checked genes

Lus10028186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.