Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44950 675 / 0 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT1G55250 259 / 6e-74 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042890 [exp] 1409 / 0 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10041689 [exp] 296 / 2e-87 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10024057 [exp] 182 / 1e-47 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141300 [exp] 924 / 0 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.014G055800 [exp] 910 / 0 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.001G008800 [exp] 346 / 5e-106 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Potri.003G216651 [exp] 132 / 7e-33 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028187 pacid=23166438 polypeptide=Lus10028187 locus=Lus10028187.g ID=Lus10028187.BGIv1.0 annot-version=v1.0 ATGGAGAGCACCGGCGAGCCAGACCGAAAGAGGCGACACTTTAGCTCCTTGTCGCCTACTGCTGTGATGGCGAAGAAGCAGCCGCTCTCTCACTTCTCCG ATGATAAAAAGCTTGACACTGCTGTCCTTCAATTCCAAAACCAAAAGCTTCTACAAAAATTAGAAGCTCAGAAAGTTGAGTACTCCATATTGGAAAGCAA GTACTCCCAGCTCAAAGAGAGGCAGCAGCCTTATGATTCCACATTAAATGCTATCGACAAATCCTGCAAATTGTTGGTTAATGACTTAGAGGCTCGCTCG AAACAGTTGAGAGAATCAAGTAGTTCGAATGCATCCCAGAAAGCATTAAAAGAGGATATTGCCGTTGTTCCTGAGGACGCTTTCCTTAGTCGACTCATGG AAACAGGTGCAACCGAAAGCTCATCTGCTAATAGTATCCCTGAGCAGATAGATGAAAGCAGGGAAACTGGTTCTGGTAATGTTGAAGTTGTACAGATGGA AGCAGAGATAGAGGCTGTCACAAATAAGATGAAGGATATCCTTAAAAGTATTGTGCTTGCAATAAATGACCTTTGGCATGTGAAGCATGAATTGCATGCT GCGGTTCTGAAAGAACTTCCAAACGATGGTGCATGCAGGCAAAAGTCATGTACTGAATTAGTTATGGAAGTCAAGAACTTCAGATCAACATTAAGTGACC TTCATTTAAGGCACAAATCGCTGTCGAGGGACTTGCAGGGTAGACGAGATACCGATGCAAAGAATAAAGCACAGCTTATGCGATTGAAAGGAGAATTGGA GACTTCAGTTAGTGAATTACGCGGCACTAATTGCAAAGTAACAACTCGCAAGGCAGAGAGAGATGCAACAAAAGGAACATTTTTCCCTGTCTTAAACCTG GGAAGTAAACATGGTGGTGGTGATAAGAGTGAAGAGAAACAAAAAGGTCTGCACGAGATGGAAGCTGCACTCAAAGAGCTCTCTGAACAAGCTTCCTCTC GGTTGGTGGCCTTAAAAGCTTTACATAATGATAGGATAAAAATGTTGGAGCACTTATCTGATTTACAGAACTCGTTGAAGAATATCAAGTGCATCTCCTC CTCACAAACCTTCCTTTTAGCAAGGGACCAATTAGAAAAGTCGAAAACAGAAGTGTCCAGATATCAGGGCATTTTTGAGAAGTTTCAGGTTGAGAAGGAT AACCTTCTATGGAGGGAAAAGGAACTGAATATGAAAAGTGATCTCCTTGATGTTTATCGAAGATCTTCTGCAGTTATGTCTTCAAGACTATCAGAGTTGG AGTCAGAGATAAATAAACATATTAATGAACAGCATATGATTAAGGTTAAGTTGGAGGAGGCATCAAAAGAACCTGGGTGGAAAGAAGTTATTAAAGAATT TAAAGTATTAGTGTCGTCATTTGCTGATGATATGAGTGCTATGCAATGCCAATTAAGTAGTTATAAAGAGGCTGCCTCAGATATTCATTCCTTGCGAGCT GATGTGCAGTGTCTGTCAGAAGTGCTTGATAGAAAGGCTAAGCAGTCGACAAGTTTATCATTGAGGTCAAGGAATCAAGTTTCCGAGATGGAGAAGTTGC AATCTTTGGTCAAAGATCTACAGGAAAGTGGAGCAGAATTGAAAGTAATTTCAGACATGTATAGGCGTGAATCAACTGATTCAAGGGATTTTCTGGCGGC AAGAGATTCTGAGTACCAGGCTTGGGCTCAAGTTCAAAGTTTAAAGTTATCCCTTGATGAGCAGAATTTGGAACTACGTGTTAAGACTGCAAACGAAGCC GAGGCAATTTCACAGCAGAAGCTGGCTGCTGCAGAAGCTGAGATTGCTGATTCAAGAGAAAAATTGGAAGCTTCAAAAAGAGAAATGTCGAAGCTTTCCG ATGTCCTCAAATCCAAAAGTGAAGAAAATGAGGCATACTTGTCTGAAATTGAGTTCAGAACTTTGTTGCAGACTATTGGACAAGCATATGATGACATGCA AACTCAAAACCAACATTTACTGCAGCAAGTCACAGAGCGAGATGACTATAATATCAAGTTAAAAAGTAATTCAGATCAGGTTCAGAAGATTGCTGCAGAT AAATCTCAGAACTCGGTCACATTTGAGAATGTGCAGAAGAGATTGCATGATGCAAGGAGATCATTTAGTCAAACGAGGGAATTGCTTGATGTCTCACAAT CTAAGGTTGAGGAAAGTCGAATGACTCTTGCTGAGCTGCAAATAGACGTGGAAAAAGAGAGGTTTGAGAAGAGAAGAAAAGAGGAGGAGTTAGAAATTGC AAGAAGAAAGCTGTTATATCTTAGAGCTGAGTCAGAGGGTTCATCAATCTTAGAGAAGCTTCGGCAAGAACTTAGAGAATACAGAGAAATTGTGAAGTGT AGTGTCTGCCATGACAGGCCCAAGGAGGTAAACTAG
AA sequence Show only first row Show all	>Lus10028187 pacid=23166438 polypeptide=Lus10028187 locus=Lus10028187.g ID=Lus10028187.BGIv1.0 annot-version=v1.0 MESTGEPDRKRRHFSSLSPTAVMAKKQPLSHFSDDKKLDTAVLQFQNQKLLQKLEAQKVEYSILESKYSQLKERQQPYDSTLNAIDKSCKLLVNDLEARS KQLRESSSSNASQKALKEDIAVVPEDAFLSRLMETGATESSSANSIPEQIDESRETGSGNVEVVQMEAEIEAVTNKMKDILKSIVLAINDLWHVKHELHA AVLKELPNDGACRQKSCTELVMEVKNFRSTLSDLHLRHKSLSRDLQGRRDTDAKNKAQLMRLKGELETSVSELRGTNCKVTTRKAERDATKGTFFPVLNL GSKHGGGDKSEEKQKGLHEMEAALKELSEQASSRLVALKALHNDRIKMLEHLSDLQNSLKNIKCISSSQTFLLARDQLEKSKTEVSRYQGIFEKFQVEKD NLLWREKELNMKSDLLDVYRRSSAVMSSRLSELESEINKHINEQHMIKVKLEEASKEPGWKEVIKEFKVLVSSFADDMSAMQCQLSSYKEAASDIHSLRA DVQCLSEVLDRKAKQSTSLSLRSRNQVSEMEKLQSLVKDLQESGAELKVISDMYRRESTDSRDFLAARDSEYQAWAQVQSLKLSLDEQNLELRVKTANEA EAISQQKLAAAEAEIADSREKLEASKREMSKLSDVLKSKSEENEAYLSEIEFRTLLQTIGQAYDDMQTQNQHLLQQVTERDDYNIKLKSNSDQVQKIAAD KSQNSVTFENVQKRLHDARRSFSQTRELLDVSQSKVEESRMTLAELQIDVEKERFEKRRKEEELEIARRKLLYLRAESEGSSILEKLRQELREYREIVKC SVCHDRPKEVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	0	1
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	1.0	0.9492
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	1.4	0.9410
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	1.7	0.9371
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	4.0	0.9131
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10007311 [exp]	4.2	0.8926
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	6.5	0.8960
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	8.2	0.9207
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	8.4	0.9177
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	8.9	0.8942
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	10.0	0.8911

Compare expression of checked genes

Lus10028187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.