Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22060 512 / 0 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 503 / 1e-177 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 151 / 5e-42 ATERDJ3B DNAJ heat shock family protein (.1) AT2G22360 143 / 3e-38 DNAJ heat shock family protein (.1) AT1G80030 142 / 2e-37 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 132 / 6e-34 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 127 / 2e-32 GFA2 gametophytic factor 2 (.1) AT3G08910 121 / 5e-31 DNAJ heat shock family protein (.1) AT1G28210 116 / 1e-28 ATJ1 DNAJ heat shock family protein (.1.2) AT3G17830 114 / 2e-27 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042891 [exp] 748 / 0 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10004109 [exp] 463 / 1e-162 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 233 / 8e-74 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 230 / 2e-72 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 216 / 5e-67 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10032100 [exp] 150 / 2e-41 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 148 / 1e-40 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 146 / 6e-40 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 142 / 2e-38 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141100 [exp] 579 / 0 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 532 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 529 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 516 / 0 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 329 / 2e-111 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 162 / 6e-48 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.002G198000 [exp] 147 / 1e-40 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 147 / 2e-40 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 142 / 1e-37 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.007G094900 [exp] 136 / 1e-35 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028188 pacid=23166539 polypeptide=Lus10028188 locus=Lus10028188.g ID=Lus10028188.BGIv1.0 annot-version=v1.0 ATGTTTGGGCGTGGAGGTCCTAGGAGGGGTAGTGACAATTCTAAGTACTATGAAGTCCTTGGTGTCCCGAAGACTGCGAGTGCTGATGAACTGAAGAAGG CCTATAGAAAGGCTGCCATAAAAAATCATCCCGATAAGGGAGGAGATCCGGAGAAGTTCAAGGAATTATCCCAAGCTTATGATGTTCTGAGTGATCCTGA GAAAAGAGAAATCTATGATCAGTATGGTGAAGAGGGCATCAAGGAGGGGATGGGAGGAGGAGGCCATGGTGCCCATTCTCCTTTTGACATATTTGAATCA TTTTTTGGCGGTGGGGGTTTCGGAGGAGGTGGTAGTTCCAGAGGAAGAAGGCAGCGAAAAGGAGAGGATGTAGTGCATCCATTGAAAGTCTCCTTAGAGG ACTTGTACAATGGGACCACAAAGAAACTCTCACTGTCAAGGAATGTTCTCTGCTCCAAGTGCAGAGGTAAGGGATCAAAGAGTGGAGCTTCTGGTACATG TTATGGATGTCAAGGTACAGGAATGAAAGTGACAGCCCGGCAGATTGTACTAGGCATGATTCAGCAGATGCAGCAAGTCTGTCCCGATTGTAGAGGCTCA GGCGAGGTAATCAGCGAGAGGGATAGATGTACACACTGCAAAGGGAAAAAGGTTGCACATCAAAAGAATGTGCTCGAGGTTCATGTCGAGAAGGGTATGC GCCATGAACAGAAAATAGTTTTCGAGGGTCAAGCTGATGAAGCTCCTGACGTGGTTACCGGAGACATCGTCTTCGTGTTGCAACTGAAAGAGCATCCCAA GTTCAAACGAAAGTATGATGATCTAGAAATGGAGCATACACTTAGTTTGACGGAAGCTCTGTGTGGATTTCAATTTGCCCTCACTCATCTTGATGGAAGG CAGCTGCTAATCAAATCAGATCCGGGAGAGGTCATTAAACCTGGTCAGTGCAAGGCAATTAATGACGAGGGAATGCCGCAGCACGGCAGGCCCTTCATGA AGGGAAAGCTATATATAAGGTTCAAGGTGGAATTTGTGGAGTCTGGTACACTGTCGGAAGAGCAGTGTCGGAAGATAGAGAGAATACTTCCATCGAAGTC ATCTGGGAAGAAAGAGCTGAGCAACATGGAGTTGGATGATTGCGAAGAGACTACTCTGCATGATGTGAACATGGCCGAGGAGGATCGGCGTAGGAAGCTG CATCAACATCAGCAACAGCGAGAGGCTTACGATGAAGATGACGACCCATCGACGGAACGTGTCCAGTGTGCCCAACAGTAA
AA sequence Show only first row Show all	>Lus10028188 pacid=23166539 polypeptide=Lus10028188 locus=Lus10028188.g ID=Lus10028188.BGIv1.0 annot-version=v1.0 MFGRGGPRRGSDNSKYYEVLGVPKTASADELKKAYRKAAIKNHPDKGGDPEKFKELSQAYDVLSDPEKREIYDQYGEEGIKEGMGGGGHGAHSPFDIFES FFGGGGFGGGGSSRGRRQRKGEDVVHPLKVSLEDLYNGTTKKLSLSRNVLCSKCRGKGSKSGASGTCYGCQGTGMKVTARQIVLGMIQQMQQVCPDCRGS GEVISERDRCTHCKGKKVAHQKNVLEVHVEKGMRHEQKIVFEGQADEAPDVVTGDIVFVLQLKEHPKFKRKYDDLEMEHTLSLTEALCGFQFALTHLDGR QLLIKSDPGEVIKPGQCKAINDEGMPQHGRPFMKGKLYIRFKVEFVESGTLSEEQCRKIERILPSKSSGKKELSNMELDDCEETTLHDVNMAEEDRRRKL HQHQQQREAYDEDDDPSTERVQCAQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	0	1
AT5G62270			unknown protein		Lus10035022 [exp]	2.6	0.9374
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	2.8	0.9472
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	3.5	0.9327
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	4.5	0.9472
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	4.7	0.9234
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	5.5	0.9422
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	8.0	0.9422
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	8.1	0.9331
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	8.9	0.9419
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	10.2	0.9318

Compare expression of checked genes

Lus10028188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.