Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19690 128 / 8e-39 PLA2-BETA phospholipase A2-beta (.1.2) AT4G29460 117 / 8e-34 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1) AT4G29470 109 / 7e-31 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1) AT2G06925 63 / 3e-13 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042892 [exp] 203 / 3e-68 AT4G29460 147 / 2e-45 phospholipase A2 gamma, Phospholipase A2 family protein (.1) Lus10011960 [exp] 59 / 2e-11 AT2G06925 204 / 3e-68 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149700 [exp] 164 / 8e-53 AT2G19690 153 / 2e-48 phospholipase A2-beta (.1.2) Potri.018G132100 [exp] 65 / 9e-14 AT2G06925 228 / 9e-78 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G070400 [exp] 64 / 1e-13 AT2G06925 216 / 4e-73 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.012G049101 [exp] 54 / 2e-10 AT2G06925 157 / 4e-51 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028189 pacid=23166413 polypeptide=Lus10028189 locus=Lus10028189.g ID=Lus10028189.BGIv1.0 annot-version=v1.0 ATGAGGTTTAATGGTCTGGCCGCGGCATTCACCTTCGTGTTCCTCTTCCTCTTTTCCCTCGTCTCCTCCTCCGCCACCAATCGTCATGGCGCTCAGGCAA TTTGCAGCAGGACCTGTGTGGTGCAGAACTGTGATTCATTTGGGATACGTTACGGCAAGTATTGTGGGCTAGGGTGGACCGGCTGCCCTGGGGAGAAGCC CTGCGACGATCTAGACGCCTGCTGCAAGATTCACGATGATTGCGTTGGGAAGAACGGTCTAACCAACATCAAGTGCCACGAAAAGTTCAAGAAGTGCGCC AAGAAAGTGCAGAATTCAGGGAAAATAGGATTCTCTAAGCGATGCAGTTATGAGAAAGCCATCCCCACTATGCTCAATGGTATAGATATGGGCATTTTAT TGAGCCAGTTTGGTGATTCCAAACCTGAGCTCTGA
AA sequence Show only first row Show all	>Lus10028189 pacid=23166413 polypeptide=Lus10028189 locus=Lus10028189.g ID=Lus10028189.BGIv1.0 annot-version=v1.0 MRFNGLAAAFTFVFLFLFSLVSSSATNRHGAQAICSRTCVVQNCDSFGIRYGKYCGLGWTGCPGEKPCDDLDACCKIHDDCVGKNGLTNIKCHEKFKKCA KKVQNSGKIGFSKRCSYEKAIPTMLNGIDMGILLSQFGDSKPEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	0	1
AT1G28120			unknown protein		Lus10030429 [exp]	1.4	0.8737
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10009873 [exp]	4.7	0.8313
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10031017 [exp]	6.3	0.7291
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	8.5	0.8114
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	8.5	0.8174
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	8.8	0.8262
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	12.6	0.8142
AT1G52530			unknown protein		Lus10003678 [exp]	15.5	0.7958
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	16.9	0.7961
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	22.6	0.7615

Compare expression of checked genes

Lus10028189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.