Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00026 264 / 2e-86 SD3 SEGREGATION DISTORTION 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042893 [exp] 440 / 2e-155 AT4G00026 275 / 2e-92 SEGREGATION DISTORTION 3, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140700 [exp] 302 / 5e-101 AT4G00026 291 / 7e-99 SEGREGATION DISTORTION 3, unknown protein Potri.014G054400 [exp] 295 / 3e-98 AT4G00026 287 / 5e-97 SEGREGATION DISTORTION 3, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0455 [flax] [poplar] MIM-OM_import PF08294 [flax] [poplar] TIM21 TIM21
Representative CDS sequence Show only first row Show all	>Lus10028190 pacid=23166549 polypeptide=Lus10028190 locus=Lus10028190.g ID=Lus10028190.BGIv1.0 annot-version=v1.0 ATGGATCCGTCGAATGGGCCAGATGGGTGGGCCTTCACACGTGTGGATGCTTCTTCAGCACGTGTCCGAGAAAACAAAACCCCTCCGAATTTTGTGCGAG CCTGGGGGTTTTGGTTTTGGGTTTGCTTCTCCTCCGTCGTATCGTCCTCCGATTTGGTTGCTTCCCAAGTTTACAACTTTCGGATTCTACTTCACGCTTT AGGCTGCTGCTATATCACCGCTGCTGGTCTCGCTTCTCGAGGTTCATCTAAGGTGGAAAATGCAAGGCTTGAGGAGGAAATCTGCGCTTCTCTTGAGATC TCCGACTGGGTTGTCTTCTCTTCTTGGCTCAAACCCTCATGCAAACTTCGCTACTGCTGCTGGGAAAGCTGCTGTTATCCCTTTATCGGATATAAGGGCA ACAAGGTTTCCTTGATGCAGATATCTGGGGCAGCATCCAAGTCTAGGGGGTTTCTGACTCATTTCAGTGCTCGTGGTGGTGCCACTCGGTGGGAATCTCG TCAAGCAAATGGACTTCTTGTTTTCCGCAATGGATGGAATTGTGGACAATCCGTAGCAGGGTTTAGAACACGGTGCCAACTTCTACAGAGCGATTCGAAA AAACAAAGCAGTAATCAATTATTTTCCAGATCCTTCGCATCAAGACCGCCCAGGAAAGCTGAGCAGAGCCGCTCTGAACAGACCAAAAAAGATGTGTCCA CTGTTGAGGATCCTTTTGATGCTCCCACTTACAATATCCCAGAGAAGCCTGTCACGTTTACAGAGGGTGCTTCCTATACTTTGGTAATCCTAGTTGGTCT TGGATTAGCAGCTGCTGCAGGTTATGCTGTTTTCAAGGAACTGATATTTGAACCAAAGGAGTACAAGATCTTTAACATGGCACTGAAAAGAATTCAAGAC GACAGTCAGGTACGGGTGAGGATTGGATCTCCGATAACAGGTTATGGTCAGGAAAGTAGAAACCGTGCTGCCCGCCAAAGAATTCCAAACAAGATCTACA CTGACGAAGATGGAATTGAGCATGTCCTGGTAAACTTTCATATCCGTGGGCCACATGGAGCTGGCAAGGTATCGGCGGAGATGTTCAGAGATAAAGTGGA CAAGCAGTGGAAGTATACCTACTTGATTGTTCAGATCACACATCCTTCACAATCTCAACTGATTCTGGAGTCTTACATACCGGCGGCACCTGCACCAGTT CCAGCAATGGGACGGTAA
AA sequence Show only first row Show all	>Lus10028190 pacid=23166549 polypeptide=Lus10028190 locus=Lus10028190.g ID=Lus10028190.BGIv1.0 annot-version=v1.0 MDPSNGPDGWAFTRVDASSARVRENKTPPNFVRAWGFWFWVCFSSVVSSSDLVASQVYNFRILLHALGCCYITAAGLASRGSSKVENARLEEEICASLEI SDWVVFSSWLKPSCKLRYCCWESCCYPFIGYKGNKVSLMQISGAASKSRGFLTHFSARGGATRWESRQANGLLVFRNGWNCGQSVAGFRTRCQLLQSDSK KQSSNQLFSRSFASRPPRKAEQSRSEQTKKDVSTVEDPFDAPTYNIPEKPVTFTEGASYTLVILVGLGLAAAAGYAVFKELIFEPKEYKIFNMALKRIQD DSQVRVRIGSPITGYGQESRNRAARQRIPNKIYTDEDGIEHVLVNFHIRGPHGAGKVSAEMFRDKVDKQWKYTYLIVQITHPSQSQLILESYIPAAPAPV PAMGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	0	1
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034789 [exp]	3.5	0.8959
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	4.0	0.9248
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	4.7	0.9168
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	7.4	0.8920
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	10.8	0.8624
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	14.3	0.8917
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	15.1	0.8932
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	17.0	0.8759
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	19.6	0.8814
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	19.6	0.8381

Compare expression of checked genes

Lus10028190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.