Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17470 568 / 0 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) AT3G14050 97 / 5e-21 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 96 / 1e-20 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT1G54130 94 / 9e-20 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT2G43290 44 / 0.0001 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 43 / 0.0002 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042894 [exp] 483 / 9e-166 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10022102 [exp] 108 / 8e-25 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 103 / 1e-22 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 97 / 6e-21 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 96 / 2e-20 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 85 / 4e-17 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 69 / 5e-12 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002400 [exp] 624 / 0 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Potri.001G168200 [exp] 109 / 8e-25 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 106 / 6e-24 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 105 / 3e-23 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 74 / 1e-13 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10028191 pacid=23166531 polypeptide=Lus10028191 locus=Lus10028191.g ID=Lus10028191.BGIv1.0 annot-version=v1.0 ATGCTGATGGCGATGGAGTTGTGTGGTCTTCGTCACTTATCCTCTCATAGCATCCTAACCGTACCTTCGCAGTCAACGTCTTCAATCTTGTCCCTGAAAG GCATAACGATGCCGATGAGCAAAAGTGGTAACCGTTCATCTCGGCGAAAGACGGCAGCGAACCACCCCTTGGAGCAGCCTGGTGGGAAGATGGTGGTGGA GCTCGTGGGAGCTTTCAATTCTCTGACGCAGAGGATGAATGTGCTCTCTACCAGCTCCTCTCGCTTGCTCTTCGCCACCCTCAAGCTCTCCATCCCCATT TTGCAGAACTTGGGCCTCGCTCCAGATGGAAGACCTCCTCTCGCCAAAGCCTTGTCTCTCGCTCTCCTCCTCGCCGATCTTCAGATGGATGCAGAAGTTC TTTCTGCTAGCATATTGTGGCATGTGCTTGAGGCAAATGCCATATCTCTAAAGGAGGTGAGAAGCCGGGTCGGCCCTGCTACTGCACATCTTCTCCATGA AACCTGGCGCCTTAAAACACTTCCTACCAGATTGGATGTGTTAGATGATGATGATGATGCTGCTGCTTCTATGTTGCGACGCTATTGCCTTACTTATTAT GACATCCGTGCTCTTGTTCTGGACCTGGCACTCAAGCTTGACATGATGAGAAATTTGGATTACCTGCCTCGTCATCAACAACTCTTGGTGTCTCTTCAAG TTATGAGACTACATGCCCCACTGGCTCATGCTGTTGGAACGCACTCACTGTCATTGGAGCTTGAGGATCTGTCCTTTAGTTATCTCTTTCCATATTCCTA TCTCTACGTCGATGCCTGGCTACACAGCCATGAGAGTGGAAGCCGGTCTATCATGGATGAGTATGCTCTACGTCTGCATCACTGCCTTACAGATGATCCA TTGTTGGTGGAGATGGTGGATGATGTATCTGTTAAAGGTCGCTACAAAAGCCGCTATAGCACTATGAAGAAGCTGCTCAAGGATGGTCGAAAGCCGGAAC AAGTAAATGATGTTCTGGGGCTAAGAGTCATCTTGCACCCTAAAGAAGACATGTGTGAGAAGGCATGCTACAGAACACAAGAAATAATTCGTTCGTTATG GAAGGATATACCAGATAGAACAAAAGACTACATTGCCAAGCCAAAAGCTAATGGTTATCAAAGCTTGCACATGGCTGTTGATGTGAGTGACGACAACAAT GCTAGACCAATGATGGAAATACAAATACGTACTGTAGAGATGGACAGGAAGGCGGTTGGTGGAGCAGCCTCGCATTCCTTGTATAAAGCCGGTCTTACTG ATGCACAAGAGGCAAAGCGGCTCAAGACAATAATGATGGCTGCAGCTGAATTTGCAGCACTACGTCTCAAGGATGTTCCATCTGCTGCTAAAGGCATTGA GATTGAGGGGAGAGACAGAGTGTTTGGGCTTCTGGACAAGAACGGAGATGGACGGATCAGCATAGAGGAATTAATGGAAGTGATGGAAGAGCTTGGTGCC CCGGGGAAGGATGCAGAGGAGATGATGCAACTGCTCGATTCCAATAGTGATGGCTCTCTAAACTCTGATGAATTTGATTCATTCCAGAAGCAGGTTGAAC TTATACGTGATCTAGAGCAGAAAGATGATAGCTACAAGAGCAAGTTAAAGCAGAAACTTGAGGCTGCAGAAGAGAATGGGTTGATTCAGGTTTATAGTAA AGAACTCGGCAATAGACTAGCCAGCTGA
AA sequence Show only first row Show all	>Lus10028191 pacid=23166531 polypeptide=Lus10028191 locus=Lus10028191.g ID=Lus10028191.BGIv1.0 annot-version=v1.0 MLMAMELCGLRHLSSHSILTVPSQSTSSILSLKGITMPMSKSGNRSSRRKTAANHPLEQPGGKMVVELVGAFNSLTQRMNVLSTSSSRLLFATLKLSIPI LQNLGLAPDGRPPLAKALSLALLLADLQMDAEVLSASILWHVLEANAISLKEVRSRVGPATAHLLHETWRLKTLPTRLDVLDDDDDAAASMLRRYCLTYY DIRALVLDLALKLDMMRNLDYLPRHQQLLVSLQVMRLHAPLAHAVGTHSLSLELEDLSFSYLFPYSYLYVDAWLHSHESGSRSIMDEYALRLHHCLTDDP LLVEMVDDVSVKGRYKSRYSTMKKLLKDGRKPEQVNDVLGLRVILHPKEDMCEKACYRTQEIIRSLWKDIPDRTKDYIAKPKANGYQSLHMAVDVSDDNN ARPMMEIQIRTVEMDRKAVGGAASHSLYKAGLTDAQEAKRLKTIMMAAAEFAALRLKDVPSAAKGIEIEGRDRVFGLLDKNGDGRISIEELMEVMEELGA PGKDAEEMMQLLDSNSDGSLNSDEFDSFQKQVELIRDLEQKDDSYKSKLKQKLEAAEENGLIQVYSKELGNRLAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	0	1
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	2.0	0.8559
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	4.0	0.8458
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	4.5	0.8346
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	5.7	0.8174
AT3G22520			unknown protein		Lus10006124 [exp]	6.5	0.8200
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	7.7	0.8365
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	7.7	0.8386
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	10.4	0.7927
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	12.2	0.8159
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	12.6	0.8085

Compare expression of checked genes

Lus10028191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.