Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01710 236 / 5e-82 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) AT5G65274 229 / 7e-79 ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042895 [exp] 259 / 5e-90 AT4G01710 224 / 9e-76 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10027941 [exp] 113 / 5e-34 AT4G01710 89 / 1e-24 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Lus10012040 [exp] 114 / 3e-32 AT4G01710 92 / 2e-23 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136500 [exp] 235 / 3e-81 AT4G01710 224 / 4e-77 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1) Potri.014G045200 [exp] 221 / 8e-76 AT4G01710 208 / 9e-71 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04699 [flax] [poplar] P16-Arc ARP2/3 complex 16 kDa subunit (p16-Arc)
Representative CDS sequence Show only first row Show all	>Lus10028192 pacid=23166507 polypeptide=Lus10028192 locus=Lus10028192.g ID=Lus10028192.BGIv1.0 annot-version=v1.0 ATGGCCGGTGCTGACGGATTTGTGGAATCAGAGAACGCCGAGGCAATCATTACCAGAATCGAACAGAAGTCTCGCAAGATCGAGAGCTTACTCAAACAGT ACAAGCCAGTTGAAGCTCTCAAGACAGCGCTTGAAGGATCGCCTCCGAAGACCGGCGATGAGCGATGCAAGTCTGCGAATTGGATAGTGGTTCATAGAGC GATTATGGCGATCAAAGACGTCGACGGAATGCTGACCTCATTGGACCCTGAGTATTACGATATCCTCATGAAGTATGTGTACAGAGGGTTGTCTACAGGA GATCGGCCGACATGTGATCAGTGCCTGCGGATACACGAGAAATTGACAGCGAAGGCTGGACTGGGTTGCATTTTGCGCTCTCTTTCCGACACTGTAAATA CTGTTTAA
AA sequence Show only first row Show all	>Lus10028192 pacid=23166507 polypeptide=Lus10028192 locus=Lus10028192.g ID=Lus10028192.BGIv1.0 annot-version=v1.0 MAGADGFVESENAEAIITRIEQKSRKIESLLKQYKPVEALKTALEGSPPKTGDERCKSANWIVVHRAIMAIKDVDGMLTSLDPEYYDILMKYVYRGLSTG DRPTCDQCLRIHEKLTAKAGLGCILRSLSDTVNTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10028192 [exp]	0	1
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	2.4	0.9043
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	2.4	0.8847
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	5.0	0.8758
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	8.0	0.8732
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	10.6	0.8987
AT4G35980			unknown protein		Lus10028436 [exp]	11.7	0.8751
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	11.8	0.8743
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	12.8	0.8685
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10003092 [exp]	13.5	0.8633
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	13.9	0.8620

Compare expression of checked genes

Lus10028192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.