Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60380 112 / 2e-25 unknown protein AT4G16790 58 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042896 [exp] 895 / 0 AT3G60380 91 / 1e-18 unknown protein Lus10004758 [exp] 45 / 0.0003 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045300 [exp] 280 / 1e-83 AT3G60380 89 / 3e-18 unknown protein Potri.002G136600 [exp] 270 / 1e-80 AT3G60380 86 / 5e-17 unknown protein Potri.001G155000 [exp] 84 / 1e-16 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G079900 [exp] 81 / 7e-16 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028193 pacid=23166523 polypeptide=Lus10028193 locus=Lus10028193.g ID=Lus10028193.BGIv1.0 annot-version=v1.0 ATGGCGGATTCGGTCCATTCAACCCCCTTAGCCTCAGCCGCCGCCGGTCAATCTAAGTCCGTCAAGGCGAACCCTCCGTCATCATCCGCCGCTTACTATT CTCCTCTTCTCTGTAAGTTGTTCCTCTTCCTGCTGCTTCTTCTCGCTATTCCGCTATTGCCCTCGCAAGCGCCGGACCTTTTCAACCAGAGCTTCCTCAC AAACCTCTGGGAGCTTTCCCAACTTCTATTTATCGGCCTTGCTGTGTCGTATGGACTATTTAGTCGTAGGAATGCCGAACCGGATGATCACTTTGCGACC GATAATAGCTCCCAATTTACTGTTGCCGAGTCCCAGTCGTCGTTTGTGTCTAGAATATTCCAAGTCTCGCCTCTCTTTGAAGATAGCTATGAGGTTCCTT CTGAATGCGAGGATAAAACGGCTGTTTCCCATGTTCAGCTGTCTGCGGCTAGTTACAGTTATACTGCTCCTGACCCGGTCGCCTATGATGGTTATGGGAA CCACCAATCTGTTTCTGTGAAAAATGGTTTCGAGATTCCTAATCACTCTGGCGGGGATGAGGTGATGCAGGCTTGGAATGCTCAGTATTTTCAAGGTCAA TCAACTGCTGTTGTGTCTAAACCTAATATGGATGTTTTGGGTCAATGTGAAATGAACAACGCTCAGAAACCCTTAGGTTTGCCTGTTAGAAGTTTGATTT CGAGTGGTAGAGACTTCAATATGCCTGATTTCAGTAATATTAACATCAGTAAGGCTGCTGCTCAGAGCAAAGAGGATGATGGCGGTGCATATGGGTCTGG TGAGGAATTCTTTGGAGATGTAAATCCTGTGAATTTAGAAGAGAAGTTTAATCAAACTGTTGATTATTCAGACTTTTCATGGCGTTCGACATCTGCTAGA GAAGAGACAGGAGTAGTAGCTGCTGTTGATCGTTCTGGTCATTTTCGACCTCACTCCATTGATGAAACTCAGTTTGAGTCTCTCAAGTCAGAGTCATTTT TTGGTTCCTCCAACACTACTTCTGATGATCGTTCTGGGCATTTTCGACCTCTCTCAGTTGATGAAACTCAATTCGAGTCTCTCAAGTCAGAGTCATTTTT TGGCTCCTACAAACCACCCATCTTTTCTGAGGATGGTGTGATGCAACATTCGGCAACCACTCAGCATCATACAAAGTCGAACTCACTTCCTTCCGAGTTT CCCAACTCAGATATGAATGAATCAGGTGATGATAAGATTTCCCATGAGTCTAATCCTCCTGTCACTACTAGAGGTTCTCGAATGAATGCATTCCATTTAA GGAAGTATAGTGGTAGTGGCTCTTTGTTCAAAAAGGAATCACAGGGAAATCCGAGAGGTGTGTTGAAAGAGAAGGATTTGGATAGCTCTAGGGATCCGTT GAAAGGTTTGGGTGGGAATAAGGGAGATGAGGATGATTCAGAGAAGAAGAACAAGAAGAGCCAGCCGTCACTGAAATCGGATAAGAACGCTGAGAATGAA TTGCTGGCTAAGCCTTCGAGAAGGGGGAAATCTGTAAGGACAGTTAGATCACCTGGTGGCACTAGTACCACTGAGGTGAAAAGGGATGCTGCTGTGGCCA TGGTTCACAGCTACTTCGACGATGTAGTCGGGAAAGCATTCGATGAGATTGAAACCAGTAAGAAGAATCATGTTGCAAAGATACCAAAGCCGTCATTTGC AGAGTACAAGAAGAGAGACAGACAGAGATCTTCTGAAGCAGTGGATGGGCATAAGAAGAACGATGTCGGGAATGCAGCAAAGGCAAGAATTGCAGAATCA AAGAAGAGATCAGACGGTCGCAAATCTACTTCACGTGTTTCGGTGGAGCCTGATGAACATGAGGAGAGTAAGAAGGAAAGCATTCCGGTTGGTGACAGCA GGGGCGAAGAGGGACATGAGCACGAGTTGGATGAGGTAGATAGGAAGGCTGCAGAGTTCATAGCAAAGTTCAGGGAGCAAATAATGCTTCAAAAGGTGGC ATCCATTGAAAGATCAACTAGGAAGCGTGTGATTGTGAAGGACAGTAGGTGA
AA sequence Show only first row Show all	>Lus10028193 pacid=23166523 polypeptide=Lus10028193 locus=Lus10028193.g ID=Lus10028193.BGIv1.0 annot-version=v1.0 MADSVHSTPLASAAAGQSKSVKANPPSSSAAYYSPLLCKLFLFLLLLLAIPLLPSQAPDLFNQSFLTNLWELSQLLFIGLAVSYGLFSRRNAEPDDHFAT DNSSQFTVAESQSSFVSRIFQVSPLFEDSYEVPSECEDKTAVSHVQLSAASYSYTAPDPVAYDGYGNHQSVSVKNGFEIPNHSGGDEVMQAWNAQYFQGQ STAVVSKPNMDVLGQCEMNNAQKPLGLPVRSLISSGRDFNMPDFSNINISKAAAQSKEDDGGAYGSGEEFFGDVNPVNLEEKFNQTVDYSDFSWRSTSAR EETGVVAAVDRSGHFRPHSIDETQFESLKSESFFGSSNTTSDDRSGHFRPLSVDETQFESLKSESFFGSYKPPIFSEDGVMQHSATTQHHTKSNSLPSEF PNSDMNESGDDKISHESNPPVTTRGSRMNAFHLRKYSGSGSLFKKESQGNPRGVLKEKDLDSSRDPLKGLGGNKGDEDDSEKKNKKSQPSLKSDKNAENE LLAKPSRRGKSVRTVRSPGGTSTTEVKRDAAVAMVHSYFDDVVGKAFDEIETSKKNHVAKIPKPSFAEYKKRDRQRSSEAVDGHKKNDVGNAAKARIAES KKRSDGRKSTSRVSVEPDEHEESKKESIPVGDSRGEEGHEHELDEVDRKAAEFIAKFREQIMLQKVASIERSTRKRVIVKDSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60380			unknown protein		Lus10028193 [exp]	0	1
AT5G10990			SAUR-like auxin-responsive pro...		Lus10026297 [exp]	3.6	0.7189
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	10.8	0.7501
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	12.3	0.7417
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009943 [exp]	15.6	0.7775
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10032164 [exp]	16.2	0.7382
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	20.2	0.7570
AT5G57710			Double Clp-N motif-containing ...		Lus10023201 [exp]	27.2	0.7521
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	39.5	0.7443
AT1G03910			unknown protein		Lus10027731 [exp]	43.6	0.6698
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	47.9	0.6930

Compare expression of checked genes

Lus10028193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.