Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60370 305 / 1e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 75 / 9e-16 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13410 70 / 1e-13 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 62 / 2e-11 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G19830 62 / 3e-11 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 57 / 6e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 59 / 1e-09 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT4G26555 56 / 6e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G39710 55 / 9e-09 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT3G12340 55 / 3e-08 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042897 [exp] 439 / 1e-157 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10008359 [exp] 74 / 5e-15 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027115 [exp] 74 / 6e-15 AT2G43560 276 / 5e-94 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006949 [exp] 70 / 6e-14 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10009828 [exp] 67 / 9e-13 AT5G13410 314 / 1e-108 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10040937 [exp] 66 / 2e-12 AT5G13410 317 / 1e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024735 [exp] 65 / 2e-12 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10031700 [exp] 62 / 2e-10 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10031121 [exp] 62 / 2e-10 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045600 [exp] 330 / 3e-114 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G136800 [exp] 96 / 2e-25 AT3G60370 95 / 5e-26 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G068300 [exp] 77 / 3e-16 AT5G13410 332 / 4e-116 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 74 / 4e-15 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 70 / 8e-14 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 64 / 5e-12 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.014G149400 [exp] 63 / 7e-11 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 62 / 1e-10 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.012G012600 [exp] 59 / 3e-10 AT3G60370 49 / 4e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 61 / 4e-10 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10028194 pacid=23166400 polypeptide=Lus10028194 locus=Lus10028194.g ID=Lus10028194.BGIv1.0 annot-version=v1.0 ATGTTAGCCACCAATTTTCATATTCCAACACCGTTAACATCTTCTGGTTCGAAGAAGAAGCATATGTTGTTCAGTTGCTCTAACCACTTAGAAGTAAAGC GTCGATTTTTTCTGGTCGTCCCAGCAGCAGCATCAACTTTCATCTTTTTCCAAACATTCCCATCTTTTGGGAAGACGAAAAGCAAGAGCCCATATGACGA AAGGCGGCTGCTTGAACAGAACAAGCGGGTACAGAGGGAGAACAATGCGCCTGAAGAATTCCCCAATTTTGTTAGGGAAGGGTTTGAGGTTAAGGTAGTG GCATCAGACAAGTATGTGAAGACTGAATCTGGACTTATATACAAGGACTTCCAAGTTGGCGAAGGTCAATGCCCAATAGCTGGTCAGCAGGTGACGTTCC ATTACATAGGGTACAATGAGTCAGGGAGGCGTATCGACAGTACCTACTTGCAGGGCTCCCCTGCCAAAATCCGTCTCGGCACTAATGGCTTAGTTCCTGG GTTTGAGGAGGGGATAAGTGATATGAGACCTGGTGGAAAGAGGAGGATTATCATTCCACCAGAACTTGGACCCCCAGTTGGGCCTTCGACATTTTTCAGC GCGAAGCAGTTCGAAGTGTTTGATGTGGAGCTTCTCAGCATTCAGGACTGCACAAGGAGGACTATCGTCGGCTTTTATTCTGATGTTGTGCAAAACCCCC AACTATGGCGTGATATGTACATTGTTGATGTTGAGGAGATGGACATTTATGGTAAGGGATTGGATTCTAGTGATCTGAAGCATATGAATCAGATCTATGA GGTGGGAGTAGCTTTAGTCTACTTGGCATTTTGGTTAATGTCTCAGCGTAGTTCTAGAGGGAGCGGCGGATCAAATGGAGTAAAGTCGTTGGTGGGAGCG AGGGCGGTGGCATCTACGAAGTGA
AA sequence Show only first row Show all	>Lus10028194 pacid=23166400 polypeptide=Lus10028194 locus=Lus10028194.g ID=Lus10028194.BGIv1.0 annot-version=v1.0 MLATNFHIPTPLTSSGSKKKHMLFSCSNHLEVKRRFFLVVPAAASTFIFFQTFPSFGKTKSKSPYDERRLLEQNKRVQRENNAPEEFPNFVREGFEVKVV ASDKYVKTESGLIYKDFQVGEGQCPIAGQQVTFHYIGYNESGRRIDSTYLQGSPAKIRLGTNGLVPGFEEGISDMRPGGKRRIIIPPELGPPVGPSTFFS AKQFEVFDVELLSIQDCTRRTIVGFYSDVVQNPQLWRDMYIVDVEEMDIYGKGLDSSDLKHMNQIYEVGVALVYLAFWLMSQRSSRGSGGSNGVKSLVGA RAVASTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10028194 [exp]	0	1
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	3.6	0.9676
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	6.3	0.9579
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	6.5	0.9609
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	9.0	0.9594
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	10.4	0.9582
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	11.7	0.9572
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	12.1	0.9564
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	15.2	0.9546
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	15.3	0.9555
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	17.3	0.9553

Compare expression of checked genes

Lus10028194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.