Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35360 891 / 0 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 436 / 4e-145 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G36160 218 / 1e-60 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 213 / 4e-59 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G29900 57 / 4e-08 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017534 [exp] 996 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 984 / 0 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 930 / 0 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 577 / 0 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 427 / 1e-141 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10028199 [exp] 318 / 7e-107 AT5G35360 296 / 1e-99 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 239 / 9e-75 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10024748 [exp] 215 / 1e-59 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 210 / 6e-58 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078200 [exp] 961 / 0 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 957 / 0 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 428 / 5e-142 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.005G169100 [exp] 218 / 1e-60 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 212 / 1e-58 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.010G023100 [exp] 51 / 2e-06 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028196 pacid=23166478 polypeptide=Lus10028196 locus=Lus10028196.g ID=Lus10028196.BGIv1.0 annot-version=v1.0 ATGGAGGCCACACTGCCAGCTAGCAAATCGGTTACCTCCGTTCCTGGTTTACTTTTGAGAACAACACCAGGAATAAGAAGTTCACAATGTAGCTTTTTGG TGAGAAATAAGGTCAATTTTCCCAGACAGAGAACTCATGCGGCCCAGGTTGCTCAAAACACTATTAAGAGAGGTGGAGCTCTACGTGTAACATGCCTTGC AGAAAAAATCCTGGTCGCAAACAGAGGAGAAATTGCTGTTCGTGTGATACGAACTGCCCACGAATTAGGAATACCATGTGTTGCTGTTTACTCAACCATC GACAAGGATGCCCTTCACGTAAAATTGGCTGATGAATCAGTTTGCATCGGTGAAGCACCAAGCAATCAGTCGTACTTAGTGATAGCCAATGTCTTGTCTG CTGCTGTTAGTCGTGGATGTACCATGTTGCATCCTGGATATGGTTTCCTTGCTGAGAATGCCACATTTGTTGAAATGTGTCGAGCACACGGAATAAATTT CATTGGACCAAATCCAGATAGCATCAAAACTATGGGTGATAAATCCACTGCCAGAGAAACAATGAAGAATGCAGGAGTTCCAACTGTTCCTGGAAGTGAT GGATTGTTGCAGAGCACAGAGGAAGCAATTAGGCTGGCTGAAGAAATAGGTTACCCTGTGATGATCAAGGCAACCGCTGGTGGTGGTGGGCGTGGAATGC GTCTAGCTAAACAACCAGATGAATTTGTGAAGTTGCTTCAGCAAGCCAAGAGCGAGGCTGCTGCTGCATTTGGAAATGATGGAGTTTATTTAGAAAAATA CATTCAAAATCCAAGGCACATCGAGTTCCAGGTCCTTGCAGATAAGTATGGTAATGTCGTCCATTTTGGGGAGAGAGACTGCAGTATCCAGAGACGTAAC CAGAAGCTTCTGGAAGAGGCTCCCTCTCCAGCATTGACCCCCGAGGTGAGGAAAGCCATGGGTGATGGAGCAGGTGCAGGTGTCGGGACCCACTCGGTTG CCGCTGCCGCATCCATAGGGTACATTGGTGTGGGAACAGTGGAGTTCCTTCTGGATGAGAGGGGTTCCTTCTACTTCATGGAAATGAATACTCGTATACA GGTTGAGCATCCTGTAACTGAAATGATTTCATCTGTGGACTTGATCGAGGAACAAATTAGAGTAGCCATGGGAGAAAAACTTCGTTATAAACAGGAAGAA ATAGTGCTCAGAGGTCATTCAATCGAGTGCCGGATCAATGCAGAGGATGCATTTAAGGGATTCAGACCAGGACCCGGAAGAATAACAGCATACCTTCCAT CTGGAGGACCCTTTGTCAGAATGGACAGCCATATTTATCCAGATTATGTTGTCCCTCCAAGCTATGATTCCCTGCTCGGGAAGCTTATAGTTTGGGCCCC GACTAGAGAAAAGGCAATTGAGCGTATGAAGAGGGCCCTTGATGACACTATTATTACAGGAGTTCCTACAACAATTGATTATCATAAGTTGATCCTTGAC ATTGAGGACTTCAAAACTGGAAACGTTGATACAGCATTCATTCCAAAGCACGAAGATGAATTACAAGCGGTAGGTAGCAACCCTGACTCAGATGACCAAA TTGGATACTCTGTTGAAAGAGTACTTATCGAAAGAGCGGTTGTGGTTGTAGCAGACGCCTTTGCTGTATGGGGCAAAGGTTAA
AA sequence Show only first row Show all	>Lus10028196 pacid=23166478 polypeptide=Lus10028196 locus=Lus10028196.g ID=Lus10028196.BGIv1.0 annot-version=v1.0 MEATLPASKSVTSVPGLLLRTTPGIRSSQCSFLVRNKVNFPRQRTHAAQVAQNTIKRGGALRVTCLAEKILVANRGEIAVRVIRTAHELGIPCVAVYSTI DKDALHVKLADESVCIGEAPSNQSYLVIANVLSAAVSRGCTMLHPGYGFLAENATFVEMCRAHGINFIGPNPDSIKTMGDKSTARETMKNAGVPTVPGSD GLLQSTEEAIRLAEEIGYPVMIKATAGGGGRGMRLAKQPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN QKLLEEAPSPALTPEVRKAMGDGAGAGVGTHSVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIRVAMGEKLRYKQEE IVLRGHSIECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHIYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILD IEDFKTGNVDTAFIPKHEDELQAVGSNPDSDDQIGYSVERVLIERAVVVVADAFAVWGKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	2.8	0.8975
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	4.9	0.8774
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	5.0	0.8780
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	5.2	0.8889
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10010692 [exp]	5.5	0.8496
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	6.5	0.8767
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	6.9	0.8529
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	7.3	0.8752
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10036377 [exp]	7.8	0.8312
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	9.5	0.8393

Compare expression of checked genes

Lus10028196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.