Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44900 1079 / 0 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G60350 1031 / 0 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT2G23140 84 / 2e-16 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G46510 77 / 3e-14 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G58680 71 / 6e-13 ARM repeat superfamily protein (.1) AT1G23030 72 / 9e-13 PUB11 ARM repeat superfamily protein (.1) AT5G42340 72 / 9e-13 PUB15 Plant U-Box 15 (.1) AT3G47820 71 / 2e-12 PUB39 PLANT U-BOX 39 (.1) AT1G71020 69 / 7e-12 ARM repeat superfamily protein (.1.2) AT5G67340 68 / 1e-11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042900 [exp] 1293 / 0 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10011514 [exp] 87 / 2e-17 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 87 / 2e-17 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 77 / 2e-14 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10012260 [exp] 77 / 3e-14 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10011516 [exp] 77 / 3e-14 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 75 / 4e-14 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10016016 [exp] 76 / 6e-14 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10022919 [exp] 76 / 6e-14 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046000 [exp] 1113 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.002G137100 [exp] 1112 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.001G079300 [exp] 881 / 0 AT2G44900 1056 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.005G144700 [exp] 89 / 7e-18 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 88 / 9e-18 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G165900 [exp] 86 / 5e-17 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.009G029600 [exp] 79 / 8e-15 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 77 / 2e-14 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.005G225400 [exp] 75 / 1e-13 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 75 / 1e-13 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10028197 pacid=23166406 polypeptide=Lus10028197 locus=Lus10028197.g ID=Lus10028197.BGIv1.0 annot-version=v1.0 ATGAGTCGTAGGGTGCGACGGAAAGTGGGGAAGAAGGGCAAAGAAAAGGTAGTTTTCCCTTGTTATCCAGAGATTGAAGAGGAGGATGTGAAGAACTCCC AAGTTGTTGTTGATTGGACAGGCTTGCCTGATGACACAGCAATTCAACTGTTTTCCTGTCTGAATTACCGTGACAGAGCAAGTCTTTCCTCAACTTGTCG GACTTGGAGGGTTTTAGGTGCTTCTCCATGCTTGTGGAGTTCTTTGGATCTGCGAGCTCATAAATGTGACTCTGCCATGGCAGCATCCGTTGCTTCTAGA TGTGAAAATCTTAAGAAGCTTAGGTTTCGAGGGGTGGAAACTGCTGATGCTATAATACATCTCCAGGCTAGGAATTTGAGAGAAATAAGTGGTGATTACT GTAGGAAAGTAACTGATGCAACTCTTTCTGTAATTGTGGCTCGCCATGAGGCACTTGAAAGCCTCCAACTTGGACCAGACTTCTGTGAGAGGATTAGTAG TGATGCCATAAGGGCAATAGCTTTTTGCTGTCCTAAATTGAAGAAACTCCGACTCTCTGGTATTAGAGATGTTTCTGCTGATGCAATCAATGCTTTGGCC AAGCACTGTCCTGAATTATCCGACCTTGGTTTTCTGGACTGTCTTATGGTTGATGAAGCCGCAATTGGGAATGTGCAATCTATTCGTTTTCTATCAGTTG CTGGGACATCAAATATGAAATGGGCTGTAGTTTCTCATCTCTGGACCAAGCTGCCTAAACTGATTGGTTTAGATGTTTCAAGAACGGATATCAGTCCGGC TGCTGTTTCAAGATTATTATCATCATCTCAGAGCTTGAAAGTCATGTGTGCTTTAAATTGTTCAGCTCTTGAAGAAGACACCAGTTTTAGCGCCGATAGA CATAGAGGCAAATTGTTACTTGCCCACTTCACTGACATCTTTAAGGGGGTATCTTCATTATTTGCCGACAACACAACGAAACTGAAAAATGTTTTTGTAG ACTGGAAGGATGTGGACAAGAAAGATAAAAACTTGGAAGATATAATGACTTGGCTGGAGTGGATCCTTTCTCATACACTTTTTCGCACTGCTGAAAGCAA TCCACTAGGTTTGGATAGTTTCTGGCTCAAGCAAGGTGCAGCTATATTCCTAAGGTTGATGCAAAGTTCACAGGAGGATGTTCAAGAACGAGCAGCCACA GGACTAGCTACTTTTGTTGTCATTGATGACGAAAATGCCAGCATAGATTGTGGAAGGGCTGAGGCAGTTATGCAAGATGGTGGTATACGTCTGCTTCTGG ACCTTGCCAAATCTTGGCGGGAAGGTCTTCAGTCAGAGGCTGCTAAGGCTATAGCAAACTTGTCAGTCAATGCAAATGTTGCTAAGGCTGTTGCTGAAGA AGGTGGGATCGAAATCCTAGCAGGCTTGGCAAGGTCCTTGAACAAGCTTGTCGCGGAGGAAGCTGCAGGTGGACTTTGGAATCTTTCAGTTGGAGAGGAG CACAAGGTTGAGGAACGTGCAGCAGGTGCTTTGGCCAATTTGGCAGCTGATGACAAGTGTAGCATGGAGGTTGCACTTGCAGGTGGTGTTCATGCATTGG TGATGCTCGCCCGCAGTTGCAAGTTTGAAGGTGTCCAAGAGCAGGCTGCTCGTGCGTTAGCTAATCTGGCTGCTCATGGAGATAGCAACACTAATAATGC TGCGGTTGGTCAAGAGGCAGGCGCCCTTGAGGCACTTGTTCAACTCACTCGCTCTCCTCATGAAGGTGTCAGGCAGGAAGCTGCTGGTGCATTGTGGAAC TTATCCTTTGACGATAGAAATCGAGAAGCCATTGCAGCTGCTGGTGGCGTTGAGGCACTGGTTTCTCTTGCACAATCCTGTTCAAATGCCTCGCCTGGTC TTCAAGAAAGGGCAGCTGGAGCACTCTGGGGATTGTCTGTATCGGAAGTCAATAGCATTGCTATTGGACGAGAAGGAGGTGTTGCACCTTTAATTGCCCT GGCGCGCTCTGATGCTGAGGATGTTCATGAAACTGCTGCTGGAGCTCTGTGGAATCTTGCTTTTACCCCTGGTAATGCTCTTCGGATAGTGGAGGAAGGG GGTGTACCGGCACTAGTTCACCTTTGTTCGACATCGATATCAAAGATGGCACGCTTTATGGCTGCTTTGGCATTGGCATACATGTTTGACGGGAGGTACT TGCTTATTTCATATCGCCTATAA
AA sequence Show only first row Show all	>Lus10028197 pacid=23166406 polypeptide=Lus10028197 locus=Lus10028197.g ID=Lus10028197.BGIv1.0 annot-version=v1.0 MSRRVRRKVGKKGKEKVVFPCYPEIEEEDVKNSQVVVDWTGLPDDTAIQLFSCLNYRDRASLSSTCRTWRVLGASPCLWSSLDLRAHKCDSAMAASVASR CENLKKLRFRGVETADAIIHLQARNLREISGDYCRKVTDATLSVIVARHEALESLQLGPDFCERISSDAIRAIAFCCPKLKKLRLSGIRDVSADAINALA KHCPELSDLGFLDCLMVDEAAIGNVQSIRFLSVAGTSNMKWAVVSHLWTKLPKLIGLDVSRTDISPAAVSRLLSSSQSLKVMCALNCSALEEDTSFSADR HRGKLLLAHFTDIFKGVSSLFADNTTKLKNVFVDWKDVDKKDKNLEDIMTWLEWILSHTLFRTAESNPLGLDSFWLKQGAAIFLRLMQSSQEDVQERAAT GLATFVVIDDENASIDCGRAEAVMQDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSLNKLVAEEAAGGLWNLSVGEE HKVEERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNTNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN LSFDDRNREAIAAAGGVEALVSLAQSCSNASPGLQERAAGALWGLSVSEVNSIAIGREGGVAPLIALARSDAEDVHETAAGALWNLAFTPGNALRIVEEG GVPALVHLCSTSISKMARFMAALALAYMFDGRYLLISYRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	0	1
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040537 [exp]	2.6	0.8997
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	3.9	0.9170
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	5.7	0.9182
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	6.9	0.9177
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	7.1	0.8901
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	13.2	0.8675
AT4G39420			unknown protein		Lus10005786 [exp]	17.0	0.9061
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	17.1	0.8575
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	17.3	0.9146
AT4G39420			unknown protein		Lus10030711 [exp]	17.4	0.8975

Compare expression of checked genes

Lus10028197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.