Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44900 202 / 6e-61 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G60350 180 / 4e-53 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042900 [exp] 135 / 3e-37 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137100 [exp] 203 / 1e-61 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.014G046000 [exp] 203 / 2e-61 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.001G079300 [exp] 170 / 1e-49 AT2G44900 1056 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028198 pacid=23166429 polypeptide=Lus10028198 locus=Lus10028198.g ID=Lus10028198.BGIv1.0 annot-version=v1.0 ATGGATGAGTTTGCGTTAGTAGGAAGTGCTTCGGAGGGCATTTCAAAGAGCGTAAGCTTAGAAGGAGCTAGGAGACTAGCGTTGAAACACATTGAAGCCT TTGTCCTTACATTCTCAGATCAACATGCATTTGCAGTTGCTGCGGCATCATCAGCTCCTGCAGCTTTGGCACAGGTAACAGAGAGGGCTCGTATTCAAGA AGCTGGACATCTAAGATGCAGCGGAGCTGAAATCGGAAGATTTGTTACTATGTTACGAAATCCATCTTCTATTCTTAAAGCCTGTGCTGCATTTGCTCTT CTCCAGTTCACTATTCCCGGTGGTCGGCATGCAATGCATCATGCAAGCTTGATGCAAAACACAGGGGCTGCAAGAGTGCTGCGCGCTGCAGCAGCCGCAG CAACTGCACCCCTGGAAGCCAAAATATTTGCCAGAATCGTGCTCCGGAATCTTGAACACCATCAAACCGAACTTTAA
AA sequence Show only first row Show all	>Lus10028198 pacid=23166429 polypeptide=Lus10028198 locus=Lus10028198.g ID=Lus10028198.BGIv1.0 annot-version=v1.0 MDEFALVGSASEGISKSVSLEGARRLALKHIEAFVLTFSDQHAFAVAAASSAPAALAQVTERARIQEAGHLRCSGAEIGRFVTMLRNPSSILKACAAFAL LQFTIPGGRHAMHHASLMQNTGAARVLRAAAAAATAPLEAKIFARIVLRNLEHHQTEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028198 [exp]	0	1
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	15.7	0.8054
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	39.2	0.7646
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	149.9	0.7311
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	157.7	0.7139
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	189.1	0.7227
AT4G19370			Protein of unknown function (D...		Lus10033286 [exp]	282.1	0.7130

Compare expression of checked genes

Lus10028198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.