Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35360 296 / 7e-100 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 166 / 2e-48 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G36180 67 / 3e-13 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G36160 66 / 7e-13 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042901 [exp] 317 / 6e-109 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 319 / 6e-108 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 315 / 1e-106 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017534 [exp] 313 / 7e-106 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 306 / 3e-99 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 166 / 1e-51 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10042623 [exp] 165 / 6e-48 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10024748 [exp] 68 / 1e-13 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 65 / 2e-12 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146300 [exp] 299 / 1e-100 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 295 / 6e-99 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 166 / 3e-48 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.005G169100 [exp] 67 / 4e-13 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 66 / 6e-13 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028199 pacid=23166453 polypeptide=Lus10028199 locus=Lus10028199.g ID=Lus10028199.BGIv1.0 annot-version=v1.0 ATGGCTGAAAAAATCCTGGTCGCAAACAAAGGAGAAATTGCTGTTCGTGTGATACGAACTGCCCACGAATTAGGAATACCATGTGTTGCTGTTTACTCAA CCATCGACAAGGATGCCCTTCACGTAAAATTGGCTGATGAATCCGTTTGCATTGGTGAAGCACCAAGCAATCAGTCGTACTTAGTGATAGCCAATGTCTT GTCTGCTGCTGTTAGTCGTGGATGTACCATGTTGCATCCTGGATATGGTTTCCTTTCTGAGAATGCCACATTTGTTGAAATGTGTCGAGCACACGGAATA AATTTCATTGGACCAAATCCAGATAGCATCAAAACTATGGGAGATAAATCCACTGCCAGAGAAACAATGAAGAATGCAGGAGTTCCAACTGTTCCAGGAA GTGATGGATTGTTGCAGAGCCGAGAGGAAGCAATTAGGCTGGCTGAAGATATAGGTTACCCTATGATGATCAAGCCAACCCAGATAGTGCCAGCAAACGG GGTGGCCGCTTAA
AA sequence Show only first row Show all	>Lus10028199 pacid=23166453 polypeptide=Lus10028199 locus=Lus10028199.g ID=Lus10028199.BGIv1.0 annot-version=v1.0 MAEKILVANKGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAPSNQSYLVIANVLSAAVSRGCTMLHPGYGFLSENATFVEMCRAHGI NFIGPNPDSIKTMGDKSTARETMKNAGVPTVPGSDGLLQSREEAIRLAEDIGYPMMIKPTQIVPANGVAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028199 [exp]	0	1
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10015460 [exp]	7.3	0.8193
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	7.6	0.8763
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	21.4	0.8687
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	28.7	0.8504
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	30.1	0.8348
AT5G24350			unknown protein		Lus10007768 [exp]	31.2	0.8494
AT3G50110		PTEN2B, ATPEN3	phosphatase and TENsin homolog...		Lus10010266 [exp]	37.1	0.8407
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	37.5	0.8313
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	42.0	0.8370
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	44.0	0.8281

Compare expression of checked genes

Lus10028199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.