Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60340 440 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G47330 364 / 9e-126 alpha/beta-Hydrolases superfamily protein (.1) AT4G17483 355 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1) AT4G17480 342 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) AT5G47340 330 / 2e-112 alpha/beta-Hydrolases superfamily protein (.1) AT4G17470 325 / 1e-110 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G47350 301 / 5e-101 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042902 [exp] 654 / 0 AT3G60340 442 / 2e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004375 [exp] 394 / 3e-137 AT3G60340 411 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040173 [exp] 385 / 9e-134 AT3G60340 409 / 4e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004757 [exp] 281 / 4e-89 AT5G47330 337 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137200 [exp] 442 / 4e-156 AT3G60340 462 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G080100 [exp] 426 / 4e-149 AT3G60340 434 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G154600 [exp] 418 / 2e-146 AT3G60340 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02089 [flax] [poplar] Palm_thioest Palmitoyl protein thioesterase
Representative CDS sequence Show only first row Show all	>Lus10028200 pacid=23166496 polypeptide=Lus10028200 locus=Lus10028200.g ID=Lus10028200.BGIv1.0 annot-version=v1.0 ATGGCCTCCGGCAAATTCCCCGCCATCTTCATCTTCTTCGCCTGTGCCCTCCTGGCCTTCAACCGTGGCATTCCACTCGTCTCTTCCCTTCCGTTCGTCG TATTCCATGGTATTGGTGATAAATGTGGTAACAGAGGAATCTCGCAATTCGTTGAGCTATTAAGTCAGTGGTCTGGCTCACAAGGATACTGCCTAGAGAT TGGAGATGGAGCATGGGATTCTTGGACTATGCCCCTTCTAAATCAGACGGACATTGCTTGCGAGAAGGTGAAGAAGATGAGTGAACTCAGCAATGGTTAC AACATAGTTGGTCTTTCTCAGGGTAACTTAGTTGGACGCGGGATTGTTGAACTTTGTGATGGAGGCCCTCCTGTAAGGAATCTTGTGTCTCTAGGTGGTC CTCATGCCGGTACTGCTTCAGTCCCAATGTGTGGAGTAGGTGCAACTGACTCAGTTCCCTTTTTTCTTTCTCCTACTGAGAATTCTGGAATTATATGCAT TATTCTGGATGCCTTGCTCAAACTAGAGATATACAGCAACTATGTTCAGGAACATTTGGCTCCAAGTGGTTATCTCAAAATTCCCACGGATATGGATGAT TACATGAAAGGCTGTAGATTTCTTCCCAAACTGAACAATGAAATCCAAAGCCTCAGAAATGATAATTATAGGGAGAGGCTTACAAGCTTGGAGAATTTAG TGTTGATCATGTTTGATCAGGACACAATTTTGATACCAAAAGAAACCGCATGGTTTGGATACTACCCCGATGGCGCCTTTGGTACTATACTGTCCGTGAA CGAGACTAAGCTTTACGTTGAAGATTGGATCGGATTGAGAACATTAGACGAAGCAGGGAAAGTGAAGTTTGTGACCATGTCTGGAAATCATCTTGAAATC TCTGACAGTGATATGAGAAAGTATATCGTACCGTACATACAAGACAAAGCTTCGTTGAAGATGGTCGTAGCACAACAATCTCCTTCATTCCCTCTGCAGT GGGTTTCATCAGCCAAAGACATGCTGCTTGGACTAGTAGGCGGGCTAACACAAGCACAAGGTCAACAACCAATTCTAAAGATTGTGTCTTGA
AA sequence Show only first row Show all	>Lus10028200 pacid=23166496 polypeptide=Lus10028200 locus=Lus10028200.g ID=Lus10028200.BGIv1.0 annot-version=v1.0 MASGKFPAIFIFFACALLAFNRGIPLVSSLPFVVFHGIGDKCGNRGISQFVELLSQWSGSQGYCLEIGDGAWDSWTMPLLNQTDIACEKVKKMSELSNGY NIVGLSQGNLVGRGIVELCDGGPPVRNLVSLGGPHAGTASVPMCGVGATDSVPFFLSPTENSGIICIILDALLKLEIYSNYVQEHLAPSGYLKIPTDMDD YMKGCRFLPKLNNEIQSLRNDNYRERLTSLENLVLIMFDQDTILIPKETAWFGYYPDGAFGTILSVNETKLYVEDWIGLRTLDEAGKVKFVTMSGNHLEI SDSDMRKYIVPYIQDKASLKMVVAQQSPSFPLQWVSSAKDMLLGLVGGLTQAQGQQPILKIVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	0	1
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	3.6	0.7880
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	6.0	0.7385
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	8.5	0.7298
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	11.4	0.7341
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	12.3	0.7706
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	13.8	0.7294
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	15.5	0.7417
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	15.6	0.7139
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	15.9	0.7330
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	25.6	0.7311

Compare expression of checked genes

Lus10028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.