Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07560 1128 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT3G42640 1031 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G24520 1000 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G62670 981 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 971 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 960 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT1G80660 920 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT5G57350 919 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT4G30190 918 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 915 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028201 [exp] 1233 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1207 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10040166 [exp] 1200 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10001631 [exp] 1129 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1112 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 1066 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042183 [exp] 966 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10003259 [exp] 966 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10026224 [exp] 952 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005900 [exp] 1147 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G090300 [exp] 1133 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1132 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G188600 [exp] 1130 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1121 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G179800 [exp] 1021 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.014G046300 [exp] 1013 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.003G080500 [exp] 986 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 974 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 973 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10028203 pacid=23166442 polypeptide=Lus10028203 locus=Lus10028203.g ID=Lus10028203.BGIv1.0 annot-version=v1.0 ATGGAAGAAGTGTTTGAGCATCTCAAGTGTACCAGAGATGGTTTGAGCTCTGATGATATTCAACAAAGATTGGAGCTTTTCGGACACAACAAGCTTGAAG AGAAGAAGGAGAGTAAATTACTCAAGTTCTTGGGGTTTATGTGGAACCCTCTTTCATGGGTCATGGAAGCTGCAGCCCTCATGGCCATCGCTCTTGCTCA TGGAGGGGGATACTATCCAAAAGGGAAGAGTCCAGATTACCATGACTTTGTTGGTATCATTGTGCTGCTCATCATCAACTCCACCATCAGTTTCATAGAG GAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTCAATTGTCACCAAAGGCCAGGGTTCTCCGCAATGGCAGATGGAGCGAGGAAGATGCTGCGA TTTTAGTACCTGGAGACATTATCAGCATCAAGCTCGGTGATATCGTTCCAGCTGATGCTCGCCTTCTTGAAGGAGATCCTTTAAAGATTGATCAGGCTGC TCTTACTGGAGAATCGCTTCCAGTGACCAAAAATCCAGGAAGTGGAGTTTACTCTGGTTCAACCTGCAAGCAAGGGGAAATAGATGCAGTGGTTATTGCA ACAGGAGTCCATACATTCTTTGGAAAAGCAGCTCATCTTGTTGACAGTACAAACAATGTTGGCCATTTCCAGCAGGTTTTGACAGCAATTGGAAACTTCT GCATTTGTTCCATTGCTGTTGGTATGGTTATAGAAATTGTGGTGATTTATGGCCTGCAAAAGAGAGCATACCGAGTCGGGATTGATAATCTACTGGTTCT ACTAATCGGCGGGATCCCAATTGCTATGCCAACAGTTCTGTCAGTCACGATGGCCATTGGATCACATCGCTTGTCTCAGCAGGGAGCCATAACGAAAAGA ATGACAGCCATCGAAGAAATGGCAGGAATGGATGTTCTTTGCAGTGACAAAACAGGAACATTGACACTCAACAAACTTACTGTTGACAAAACCATGATTG AGGTTTTCGCCAAGGGTGTTGACAAGGAGATGGTTGTGCTCATGGCTGCCAGAGCATCAAGGCTGGAGAACCAGGATGCTATTGATACTGCAATTGTTGC CATGTTGGGTGATCCTAAGGAGGCAAGAGCTGGGATTAGAGAGATTCATTTCCTCCCCTTCAATCCAACTGACAAAAGGACTGCCCTGACATATTTGGAT GCGGATAGTAGAATGCACAGGGTTAGCAAAGGTGCACCAGAACAAATTCTTAACCTGGCGCATAACAAAGCGGAGATTGCCAACAAGGTCCATGGAATCA TTGACAAATTCGCAGAACGTGGACTGAGATCCCTTGGAATTGCCCGCCAGCAAGTTCCTAATGGGGATAAGGAAAGCTCAGGAGGGCCCTGGGAATTTGT CGGCCTCCTACCCCTGTTCGACCCTCCTCGCCATGACAGCGCTGAAACAATCAGAAGAGCTTTGGATTTAGGAGTCAGTGTTAAGATGATTACAGGTGAT CAGCTAGCCATTGGCAAGGAGACAGGAAGAAGGCTTGGAATGGGAACAAATATGTACCCATCTACAGCTCTGCTTGGTGATGGTGGCAATGATGCAGTTG GCTCTCTCCCCATTGATGAACTCATTGAGAAAGCTGATGGCTTTGCTGGAGTGTTCCCTGAGCATAAGTACGAGATTGTGAGGAGACTTCAAGCTAGAAA GCATATTTGCGGAATGACAGGAGATGGGGTGAATGATGCACCTGCTCTGAAGAAAGCCGACATTGGTATTGCTGTGGCGGATTCCACTGATGCAGCAAGA AGCGCTTCTGATATAGTCCTGACAGAACCTGGAACAATCATGACCATATCCAAGGACAGAGTGAAGCCATCACCCGTCCCAGATAGCTGGAAGCTGAGTG AGATTTTCGCTACTGGAATCGTCCTTGGTGGCTACATGGCCCTCATGACAGTCGTTTTCTTCTGGCTAGCTTATGAAACCAATTTCTTCTCGAAACACTT CCATGTAAAGAGCTTCAACAATGAACACTATGACCTCACGAACAAAGCAGTTGCAGATCAACTAAACCAGCAATTGGCATCAGCCCTGTATCTGCAAATA AGCACCATCAGCCAAGCTTTGATCTTCGTGACCCGGTCAAGAGGCTGGTCATTCCAGGAACGCCCTGGCTTTCTACTCGTCTTTGCGTTCTTAATAGCCC AACTGATCGCAACGGTGATATCGGCGGAAGCAAACTGGGAATTCGCAGGAATAAGAAGCATAGGATGGGGTTGGACTGGAGCCATATGGGTTTTCAACAT AGTGACTTACCTGCTTTTAGATCCCATCAAATTTGTCGTGATGTACGCTCTTAGCGGCCGAGCCTGGGGACTCGTTGTCGACAAAAGGACTGCGCTAACT AACAAGAAGGACTTCGGAAGGGAAGAAAGGGAAGCGGCGTGGGCGACGGAGCAGAGGACAATCCACGGCCTCCAGAGCGATACCGACAAGAGCACTTACA GGGAGATTAGCTTGATGGCTGAAGAAGCCAGAAAACGTGCTGAGATCGCAAGAATGAGGGAACTTCACACTTTGAAAGGAAGGGTTGAGTCGTTCGCCAA ACTGAAGGGATATGATATCGACTCCATGAACCAGCATTACACTCTCTGA
AA sequence Show only first row Show all	>Lus10028203 pacid=23166442 polypeptide=Lus10028203 locus=Lus10028203.g ID=Lus10028203.BGIv1.0 annot-version=v1.0 MEEVFEHLKCTRDGLSSDDIQQRLELFGHNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIALAHGGGYYPKGKSPDYHDFVGIIVLLIINSTISFIE ENNAGNAAAALMAQLSPKARVLRNGRWSEEDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPGSGVYSGSTCKQGEIDAVVIA TGVHTFFGKAAHLVDSTNNVGHFQQVLTAIGNFCICSIAVGMVIEIVVIYGLQKRAYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKR MTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTMIEVFAKGVDKEMVVLMAARASRLENQDAIDTAIVAMLGDPKEARAGIREIHFLPFNPTDKRTALTYLD ADSRMHRVSKGAPEQILNLAHNKAEIANKVHGIIDKFAERGLRSLGIARQQVPNGDKESSGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGD QLAIGKETGRRLGMGTNMYPSTALLGDGGNDAVGSLPIDELIEKADGFAGVFPEHKYEIVRRLQARKHICGMTGDGVNDAPALKKADIGIAVADSTDAAR SASDIVLTEPGTIMTISKDRVKPSPVPDSWKLSEIFATGIVLGGYMALMTVVFFWLAYETNFFSKHFHVKSFNNEHYDLTNKAVADQLNQQLASALYLQI STISQALIFVTRSRGWSFQERPGFLLVFAFLIAQLIATVISAEANWEFAGIRSIGWGWTGAIWVFNIVTYLLLDPIKFVVMYALSGRAWGLVVDKRTALT NKKDFGREEREAAWATEQRTIHGLQSDTDKSTYREISLMAEEARKRAEIARMRELHTLKGRVESFAKLKGYDIDSMNQHYTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	0	1
					Lus10007802 [exp]	1.0	0.9630
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	1.4	0.9559
					Lus10004778 [exp]	1.7	0.9503
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	2.2	0.9462
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	2.4	0.9461
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	3.7	0.9453
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	4.0	0.9500
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	4.0	0.9450
					Lus10033601 [exp]	4.5	0.9345
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	4.7	0.9327

Compare expression of checked genes

Lus10028203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.