Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44850 346 / 2e-118 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042906 [exp] 559 / 0 AT2G44850 319 / 1e-108 unknown protein Lus10042907 [exp] 42 / 0.0005 AT2G44840 135 / 5e-39 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137300 [exp] 358 / 6e-123 AT2G44850 379 / 2e-132 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10561 [flax] [poplar] UPF0565 Uncharacterised protein family UPF0565
Representative CDS sequence Show only first row Show all	>Lus10028204 pacid=23166514 polypeptide=Lus10028204 locus=Lus10028204.g ID=Lus10028204.BGIv1.0 annot-version=v1.0 ATGGCCACGGGTCCCAACAAAATGTGGGAAGTTGAGCTTAGCCTTGGAGTCGCAAATCTCGTAAGCGGCTCGGTCGATCAACAAAAATGTTGTCCTAATC ATAGAACCTCACACCTTCCACCTGTTCATGATGACGAATACTATGATTCTATGAAGAGGATGATCACTGTCATGCCACAAGAAAACTGTGGGATGGAGCG TTGGAAGGGCGTGCTGAAGGTTCCATTGAAGCCAGAGACTCCTCTCTACACAGTCGCCGTGTCATTCTGCCTCTCAACCATTTCCTTAAACCCTAGCCGG AATCATCAGCAGCAGCAGAAGCTGCCTTCAGCGAATGCCATTCTGTTCCATGGAGACCGAGTCGCCGGAACTGGTAGCCCAGTGATTGAGAAGCTATCTG ATCCGCAGAGGATAGCTGACATTTTGGTCTCAAAGTTTGGGGATTCTGTTAACGCCTGGGTTATCGAAGGTTCTGTATACAATGGCCCTTTTGCTATCTA TCGAGATTTCATCCCCACTGTTAACCGATGGGGGGAACCCAAATATTACGACCCTAAGGGATTCCCAGCTTCCACTTCCATTGTGTCCCTGCTGTCAAAT TGCTTCAACGAGGTAAGGAAAGCTGTTTCAGGCACTAAATCACAGGCATTGGAGCCAATGATGTTCCTCCCATACGCTCCTGCTACTTACATCCTTGGAT TCAGCAAGGGTGGCACTGTGATTAACCAGCTAGTCACCGAGCTAAGCTGTTTGGGATCGAAATCCATTTCACAAGAACCGACTCATCAGATAGTACCCGG AAGCAAAGAGGACTTCTTGAACAGTATCTCCGAGGTTCATTATGTTGATGTTGGGTTGAACTCTGCTGGCGCATACATAACCGATCCTGGGGTGATTGAG GCAATCGGCAAGCGCTTGAACGTGGAAGCTGCAGAACGGCGAGAAGGAGATCGAGGAATTCGGTTCGTGCTGCATGGAACTCCAAGGCAATGGGGGGACG ACAAGAGGGTTTGGATACGAGAGGAGAAGGACGAACTAATGCGTCTGCTTGAATGTGAAGTTGGAAGGAGCGGAGGGAAGTTGCAGGTTTGCCAGAAGGT TTATTTCTCTGAAAGGGTTCCTGATATGGAAATGCACTTTGAAATTATTGAAGCCGTGGATGTCATATAA
AA sequence Show only first row Show all	>Lus10028204 pacid=23166514 polypeptide=Lus10028204 locus=Lus10028204.g ID=Lus10028204.BGIv1.0 annot-version=v1.0 MATGPNKMWEVELSLGVANLVSGSVDQQKCCPNHRTSHLPPVHDDEYYDSMKRMITVMPQENCGMERWKGVLKVPLKPETPLYTVAVSFCLSTISLNPSR NHQQQQKLPSANAILFHGDRVAGTGSPVIEKLSDPQRIADILVSKFGDSVNAWVIEGSVYNGPFAIYRDFIPTVNRWGEPKYYDPKGFPASTSIVSLLSN CFNEVRKAVSGTKSQALEPMMFLPYAPATYILGFSKGGTVINQLVTELSCLGSKSISQEPTHQIVPGSKEDFLNSISEVHYVDVGLNSAGAYITDPGVIE AIGKRLNVEAAERREGDRGIRFVLHGTPRQWGDDKRVWIREEKDELMRLLECEVGRSGGKLQVCQKVYFSERVPDMEMHFEIIEAVDVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44850			unknown protein		Lus10028204 [exp]	0	1
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	2.0	0.8767
AT1G18680			HNH endonuclease domain-contai...		Lus10015728 [exp]	2.6	0.8445
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	4.0	0.8787
AT1G29850			double-stranded DNA-binding fa...		Lus10004609 [exp]	4.9	0.8426
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	4.9	0.8734
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	6.0	0.8309
AT4G00420			Double-stranded RNA-binding do...		Lus10024106 [exp]	7.5	0.8256
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	11.5	0.8699
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	13.4	0.8497
AT1G03650			Acyl-CoA N-acyltransferases (N...		Lus10025567 [exp]	15.2	0.7904

Compare expression of checked genes

Lus10028204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.