Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02100 513 / 0 SBI1 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042909 [exp] 610 / 0 AT1G02100 470 / 3e-167 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047300 [exp] 542 / 0 AT1G02100 530 / 0.0 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04072 [flax] [poplar] LCM Leucine carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028206 pacid=23166434 polypeptide=Lus10028206 locus=Lus10028206.g ID=Lus10028206.BGIv1.0 annot-version=v1.0 ATGTCGAAGACCGGTGCCGATTCCACGAGCACCACTGCTGCTGTTCAAGCCACCAACGACGACGCTTCCGCCAGTAAACTGTCTTGTGTGAAGAAGGGAT ACATCAAAGATGACTATGTCCATTTGTTTGTGAGGAGGCCCGTGAGAAGATCTCCAATCATCAATCGTGGATATTTTGCTCGTTGGGCTGCTTTCCGGAA GCTTCTCAATCAATTTCTCGACTGTGAGATTCTTGGTAATGCAAAGGGCCAGACGAAGAAGCAGATATTGTCACTTGGAGCAGGGTTTGATACAACGTAC TTCCAGTTGCAGGATGAAGGTAGAGCACCATGTTTATACGTGGAACTGGATTTCAAGGAGGTCACTAGTAAAAAGGCAGCTATCATTGAAACCCAATGCC AGCTGCTAGACAGAGTTGGTCCTGCAGCTTCAATCTCACGAGAGAATGGTGAAGTGCTTAGTGATCATTACAAGCTTCTCCCAGTTGATTTGCGTGACAT ACCAAAGCTGGATGATGTTATAGCTTTTGCTAATATGGATCCTAGCTTGCCAACATTTATAATTGCAGAATGTGTTTTGATATACTTGGATCCAGTTTCA ACCCGTAATATAGTTAGCTGGGCATCAAACGCATTTTCAACAGCTGTGTTTTTCCTATATGAGCAGATTCTCCCAGATGATGCTTTTGGACAGCAAATGA TCAGAAACTTAGAGAGTCGAGGATGTGCACTATTGGGTATTGATGCCACACCCACTCTATTTGCAAAAGAGAAACTTTTTCTTGAACAAGGATGGGAGAA AGCTGTTGCTTGGGACATGCTAAAAGTTTATAGTGAGTTCATTGAAGTTGCAGACAGACGAAGGATCGAACGGTTGGAGTTATTCGATGAGTTTGAAGAG TGGTACATGATGCAGGCAAGCCAATTCTTTCACCTTGCTCTTTTATGCGAACACTACTGCGTGGCGTATGCAATCAATGATTCCATGGCACTGTTCGGAG GGTACGGATTCCCAAACCGTCAGCCGGCGGTTGTCAGAGACGCCAGCCTCCCTGCATCACCGTGA
AA sequence Show only first row Show all	>Lus10028206 pacid=23166434 polypeptide=Lus10028206 locus=Lus10028206.g ID=Lus10028206.BGIv1.0 annot-version=v1.0 MSKTGADSTSTTAAVQATNDDASASKLSCVKKGYIKDDYVHLFVRRPVRRSPIINRGYFARWAAFRKLLNQFLDCEILGNAKGQTKKQILSLGAGFDTTY FQLQDEGRAPCLYVELDFKEVTSKKAAIIETQCQLLDRVGPAASISRENGEVLSDHYKLLPVDLRDIPKLDDVIAFANMDPSLPTFIIAECVLIYLDPVS TRNIVSWASNAFSTAVFFLYEQILPDDAFGQQMIRNLESRGCALLGIDATPTLFAKEKLFLEQGWEKAVAWDMLKVYSEFIEVADRRRIERLELFDEFEE WYMMQASQFFHLALLCEHYCVAYAINDSMALFGGYGFPNRQPAVVRDASLPASP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	0	1
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	8.0	0.8899
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	8.4	0.8882
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	8.5	0.8562
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	10.9	0.8563
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	11.3	0.8328
AT1G11050			Protein kinase superfamily pro...		Lus10018860 [exp]	13.0	0.8349
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	19.9	0.8424
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10015707 [exp]	20.1	0.8687
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	31.5	0.8539
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10001059 [exp]	33.2	0.8601

Compare expression of checked genes

Lus10028206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.