Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02110 508 / 6e-175 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 510 / 1e-174 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 211 / 2e-60 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT2G34670 162 / 3e-43 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G25590 117 / 6e-28 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 114 / 4e-27 unknown protein AT1G77500 114 / 1e-26 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 108 / 8e-25 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 107 / 1e-24 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 107 / 2e-24 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042910 [exp] 659 / 0 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 236 / 3e-72 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 239 / 2e-71 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10036155 [exp] 164 / 5e-44 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025777 [exp] 125 / 3e-30 AT1G52320 652 / 0.0 unknown protein Lus10014445 [exp] 123 / 8e-30 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10022116 [exp] 123 / 1e-29 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 122 / 1e-29 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10035887 [exp] 122 / 3e-29 AT1G52320 747 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047400 [exp] 579 / 0 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 526 / 0 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 234 / 1e-69 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 221 / 7e-65 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G244100 [exp] 126 / 7e-31 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 125 / 2e-30 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 125 / 2e-30 AT1G52320 615 / 0.0 unknown protein Potri.018G036400 [exp] 124 / 5e-30 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G182900 [exp] 123 / 1e-29 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.009G142900 [exp] 117 / 6e-28 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10028207 pacid=23166506 polypeptide=Lus10028207 locus=Lus10028207.g ID=Lus10028207.BGIv1.0 annot-version=v1.0 ATGGGGGGACCACCACGATCGTTACAGCACCACCAGCTCCTCCAGCCAAGAGGAGGAGGAAGAAGAAGAAGGCCAGGCAAGGAAGAAGACGAAGATGATC AGGCCAGATCCGAGATCGGGACGCGGTCGTCCGTCAAGTATCAATCTGAGAAGCAGCAATCTCCTCCTCCACCGCCGCCGCAGATATATCGGAAGGCTAG TAAGTCCGATGGAGCGGGTTCGTCAGCTAGTTTCAGGACGAAAGACATGTCCGATACGAAAATGGTGGTGAGGCACAAGGATTTGAAGGAGATCGTCGAA TCCATCAATGAGAATTTCGAGAGGGCTGCCGCCGCCGGCGACCAGATATTGGAGCTGCTCGAAATTGGCAGAGCTCAGCTCGAGCGCAGTTTCAGTCAGC TAAAGAAGACGGTTTATCACTCGAGTAGTGTGTTGAGCACCTTGAGCTCGAGCTGGACCTCGAAACCGCCATTGGCAGGGAAGTACAAGCTGGACACGAC GACGCTGAACGAAGCAGGCGGCAGCAGAAGCCTTTGTTCCACTTTGGAACGGCTTTTGGCTTGGGAGAAGAAACTCTACGAGGAAGTTAAGGCTAGAGAA GGTGTGAAGATCGAGCATGAAAAGAAGCTGTCGACCCTTCAGAGCCAGGAGTATAAAGGGCAAGATGGAAGTAAGCTAGACAAGACAAAGACTTCAATCA ACAAGCTCCAGTCTTTAATCATCGTCACCTCTCAGGCTGTTTCCACTACTTCTACCGCCATTGTTGGCCTTAGAGACGCAGATCTCGTTCCTCAATTGGT TGATCTCTGCCACGGATTCATGTACATGTGGAAGTCGATGCATGAGTACCACGAAGTACAAAACCACATAGTGCAGCAGGTGAGCGGCCTAGTGAACAGA ACAATGAACGGCCACTCAACCTCTGAGCTCCACAGGCAAGCAACTCGTGACCTTGAGTCAGCCGTCTCAGCTTGGCATTCCAGTTTCTGCCGCTTGATAA AATTCCAGCGAGACTTCATCCGGTCCGTCCAAACCTGGTTCAAGCTCACCCTACTTCCAGTCAGCAACGACACTGCCACCGGAGCGATAGAACGTTCCGA TGTTTACGCCTTCTGCGACGATCTACGTAACATAGAAAGGAAATTCTACCACTCTTACTCCATGGTAGGCGTAGGGATCCCTGAGAATGAAGCAGGACCA GGCGGACTGGATGCTCGGGATCCCTTGTCGGAGAAGAAATCGGAGCTGGCGGCTTGCCAAAGGCGAGTAGAGGATGAAATGCTGAAGCATGCAAAGGCAG TGGAGGTTACTAGATCGATGACGCTGAATAATCTGCAGACGGGGTTGCCTGGGGTTTTCCAGGCGTTGACGAGCTTCTCTGCGTTGTTTACGGAGGCGCT TGATACGGTGTGCAGACATTCGTATGGTATCAAATAG
AA sequence Show only first row Show all	>Lus10028207 pacid=23166506 polypeptide=Lus10028207 locus=Lus10028207.g ID=Lus10028207.BGIv1.0 annot-version=v1.0 MGGPPRSLQHHQLLQPRGGGRRRRPGKEEDEDDQARSEIGTRSSVKYQSEKQQSPPPPPPQIYRKASKSDGAGSSASFRTKDMSDTKMVVRHKDLKEIVE SINENFERAAAAGDQILELLEIGRAQLERSFSQLKKTVYHSSSVLSTLSSSWTSKPPLAGKYKLDTTTLNEAGGSRSLCSTLERLLAWEKKLYEEVKARE GVKIEHEKKLSTLQSQEYKGQDGSKLDKTKTSINKLQSLIIVTSQAVSTTSTAIVGLRDADLVPQLVDLCHGFMYMWKSMHEYHEVQNHIVQQVSGLVNR TMNGHSTSELHRQATRDLESAVSAWHSSFCRLIKFQRDFIRSVQTWFKLTLLPVSNDTATGAIERSDVYAFCDDLRNIERKFYHSYSMVGVGIPENEAGP GGLDARDPLSEKKSELAACQRRVEDEMLKHAKAVEVTRSMTLNNLQTGLPGVFQALTSFSALFTEALDTVCRHSYGIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	0	1
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	1.4	0.7487
AT3G60320			Protein of unknown function (D...		Lus10042910 [exp]	2.0	0.7391
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	7.4	0.7756
AT1G76190			SAUR-like auxin-responsive pro...		Lus10021825 [exp]	8.8	0.7033
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	10.1	0.7487
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	33.8	0.6491
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	38.9	0.7026
AT5G14390			alpha/beta-Hydrolases superfam...		Lus10022307 [exp]	42.6	0.5434
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10008939 [exp]	44.5	0.6305
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	44.5	0.6934

Compare expression of checked genes

Lus10028207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.