Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44830 597 / 0 Protein kinase superfamily protein (.1) AT5G47750 496 / 1e-169 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 470 / 2e-160 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G40030 423 / 2e-142 Protein kinase superfamily protein (.1) AT3G12690 405 / 4e-134 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 394 / 7e-131 RSH3 root hair specific 3 (.1) AT3G27580 397 / 8e-131 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G55910 270 / 6e-83 D6PK D6 protein kinase (.1) AT1G79250 258 / 9e-78 AGC1.7 AGC kinase 1.7 (.1.2) AT3G45780 264 / 1e-76 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042911 [exp] 748 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10022534 [exp] 498 / 1e-170 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 481 / 1e-163 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 481 / 1e-163 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 416 / 2e-138 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 415 / 2e-138 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10001757 [exp] 394 / 2e-130 AT3G12690 469 / 2e-161 AGC kinase 1.5 (.1.2.3) Lus10016629 [exp] 284 / 3e-87 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10002518 [exp] 273 / 4e-84 AT3G27580 504 / 3e-175 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137700 [exp] 739 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 495 / 1e-168 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 492 / 1e-167 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 454 / 6e-152 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 450 / 2e-149 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 437 / 2e-147 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.001G342000 [exp] 277 / 1e-81 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 266 / 2e-77 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.008G080600 [exp] 254 / 7e-76 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.010G175900 [exp] 254 / 7e-76 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028208 pacid=23166522 polypeptide=Lus10028208 locus=Lus10028208.g ID=Lus10028208.BGIv1.0 annot-version=v1.0 ATGTACAAGCTTTCAGAATCAAGTTCAAGGGGTCCTGGTGGGAGTAGGGGGCAATTGCCTCCTCAGTTGCAGATTGGTTTAGTTAGAGAAGCTGTGGAAA AGTTCAATTCCAAACAAGATGTTCACATCACTGGATTTCCCATCCCTGTAAGGCCATGGAAAGGAAAAGACACTATCTTTCAGCTACAAGAGGAGCTAGT AATGTCTAAGGTTAGTGGTGATTCTATTGATGAAGCTGCTGATGGATCTACTAGTATCTCTTTCTCTGGGGCTACTCATCCTGATGAACCCATTGATACA GATCCCATGAGAACAACTGTCTTTGTACCCATTGGCCAAACCAAATCCGAAAGTGGACGTTTTTTATCATCTATGTCTCTCAACATAGAGGATGTTCCTA CTAAGAAACCAAGTTCAGTTCTTTCACCACCTGATAGTTTGGGTGAAGAAGAAGAAGAAGCCAATGATGACTTGGTCTCTTTGCAGTCTCCTTTCTCCAA GGAATGTGTATGGGATGCTTCTCTGCCTCCAAGTGGCAATGCTAGTCCACATAGTAGCATCGAAGCGATGAGCATTATCCATAGCTGTGGTGGTAGTACG TATAGGAGCGATGCTATGTCGAGCGACGGTATGTTCAGTATGGACAGAAACTACGAGAGTACGAAAGGGAGTAGTGTTAGTGTTAGTGGAATTAGAAGGG ATTCTCTGGAGAGTGGGAGCCGAGCGAGCGATAGCAGTGGCCTTAGTGATGATAGCAACTGGAGCAACATCACTGGAAGTGCGAACAAACCTCACAAAGG GAATGATCCGAGGTGGAAGGCGATTCTTGCGATCCGAGCTCGCGATGGAATGTTGGGGATGAGTCACTTTAGATTGCTTAGACGGCTTGGTTGTGGCGAC ATTGGCAGTGTTTACCTGTCAGAACTTAGTGGGACGCGATGTTATTTCGCTATGAAGGTGATGGACAAGGCTTCGCTTGCCAGCAGGAAGAAGTTGACAA GGGCTCAGACTGAAAGAGAGATTCTTCAACTCTTGGATCATCCTTTCCTCCCTACGTTGTACACCCATTTTGAGACTGATAGATTCTCGTGCTTGGTCAT GGAGAACTGCCCTGGTGGTGATTTGCATGCTTTGAGGCAACGCCAGCCTGGGAAGCATTTCTCTGAGTATGCTGCAAGTTATTCGAAGCCATCAAAGCGT GGCGGTGCGTTCTGTGTCCAACCCACTGCTTGCATCGAACCGACATCAGTATGCATTCAGCCAGCATGCTTCATTCCTCGTCTCTTCCCTAACAAGAAGA AAAACCAAAAGAAGCCTCCTCATAGGACCGATCTCGGATTGCCATCACTTCCAGAGCTGGTGGCAGAGCCAACTGCTGCTCGATCCATGTCGTTCGTGGG AACCCATGAATACCTTGCCCCTGAGATAATAAAGGGGGAAGGACATGGCAGTGCTGTTGACTGGTGGACATTTGGGATCTTCCTCCATGAGCTACTCTAC GGTAAAACGCCTTTCAAGGGATCAGGAAACCGAGCTACATTGTTCAACGTAGTAGGGCAGCAGCTGAAGTTCCCGGAAGCGCCAGCAACAAGCTACGCGA GTCGCGATCTGATCCGTGGCTTGCTGGTGAAGGAACCCCAGCAGAGGGTTGGAGTGAAGAGAGGAGCAACGGAGATAAAGCAGCATCCTTTCTTTGAAGG AGTGAATTGGGCTCTAATTCGGTGCAGTACTCCACCGGAAGTCCCTAGACCTATGGAGGAGGCTCAGCTGCCGCCCCAGAAGTACGGTGCTGGTGCTGCT CCTGCTCCTGCTGCTGTGAAGAGGTCAGTTGGAGTTGAGAACACTAGTAAAAGAATGGTGGCTCAAACTCAAACAGGAGACGTGATGAAGTCCGGGGGTA AATATCTGGATTTCGAGTTCTTTTAG
AA sequence Show only first row Show all	>Lus10028208 pacid=23166522 polypeptide=Lus10028208 locus=Lus10028208.g ID=Lus10028208.BGIv1.0 annot-version=v1.0 MYKLSESSSRGPGGSRGQLPPQLQIGLVREAVEKFNSKQDVHITGFPIPVRPWKGKDTIFQLQEELVMSKVSGDSIDEAADGSTSISFSGATHPDEPIDT DPMRTTVFVPIGQTKSESGRFLSSMSLNIEDVPTKKPSSVLSPPDSLGEEEEEANDDLVSLQSPFSKECVWDASLPPSGNASPHSSIEAMSIIHSCGGST YRSDAMSSDGMFSMDRNYESTKGSSVSVSGIRRDSLESGSRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGMLGMSHFRLLRRLGCGD IGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMENCPGGDLHALRQRQPGKHFSEYAASYSKPSKR GGAFCVQPTACIEPTSVCIQPACFIPRLFPNKKKNQKKPPHRTDLGLPSLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY GKTPFKGSGNRATLFNVVGQQLKFPEAPATSYASRDLIRGLLVKEPQQRVGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEEAQLPPQKYGAGAA PAPAAVKRSVGVENTSKRMVAQTQTGDVMKSGGKYLDFEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	0	1
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	1.0	0.9230
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	2.4	0.8808
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	2.4	0.8777
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	4.5	0.8709
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	6.0	0.8387
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	6.3	0.8567
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	6.6	0.7992
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	6.6	0.8550
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	7.0	0.8568
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	7.1	0.8395

Compare expression of checked genes

Lus10028208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.