Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48110 1551 / 0 EDD1 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042915 [exp] 1978 / 0 AT3G48110 1479 / 0.0 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G049200 [exp] 1705 / 0 AT3G48110 1636 / 0.0 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF02091 [flax] [poplar] tRNA-synt_2e Glycyl-tRNA synthetase alpha subunit CL0040 [flax] [poplar] PF02092 [flax] [poplar] tRNA_synt_2f Glycyl-tRNA synthetase beta subunit
Representative CDS sequence Show only first row Show all	>Lus10028211 pacid=23166449 polypeptide=Lus10028211 locus=Lus10028211.g ID=Lus10028211.BGIv1.0 annot-version=v1.0 ATGGCAATCCTCGCTCTGCCTCTGGTCATCTCTGTCCTGAAACCTCAGGCGTCCCGCTTTCTCTTCCTTTGCTCCGTCGGTGACCTCAACCCCAACCGCT TCCGATTATCCCGCCGCCACTTCAGAAGAACGACTGTTTCCTCGCTGAGCACCTCTGCCTTTCAGCAGCTGCAGTCGTCCACGGAGCCGAAGAGTGAGCC TCGTAAGGACACCAGCCTCACCTTTCAACAAGCAATTCAGCGACTCCAGGCGAGTGACTACTGGGCTTCTGTTGGTTGTGCGGTGATGCAATGCAGCAAC ACGGAGGTTGGAGCTGGGACTATGAATCCTCTCACTTTCCTGAGGGTCCTCGGTCCAGAGCCATGGAATGTGGCGTATGTAGAGCCTAGTATTCGGCCTG ATGATAGTCGCTATGGAGAAAATCCTAATAGGCTTCAGCGCCATACTCAATTCCAGGTTATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTTTTCAT TCGCAGTCTGTCCGCTTTAGGCATCAATGTTAATGACCATGATATACGGTTCGTGGAGGACAACTGGGAAAGCCCGGTACTTGGTGCTTGGGGTTTAGGC TGGGAAATATGGATGGATGGGATGGAAATCACTCAATTCACGTATTTTCAGCAGGCTGGAAGTCTTCAGTTGTCACCAATATCTGTTGAAATCACTTACG GCCTTGAGCGCATACTCATGTTGCTTCAGGGAGTTGATCATTTCAAAAAGATACAGTATGCTGATGGTATTACGTATGGCGAGTTGTTCTCCGAAAATGA GAAGGAAATGAGTGCTTATTATCTGGAACATGCTAGTGTTCAGCAGCTTCAGAATCATTTTGATCTATTTGAGGCAGAAGCACGTTCTTTGCTTGCCTTG GGTTTGGCCATTCCTGCGTATGATCAGCTTCTGAAGACATCTCACGCTTTCAATATTTTGGACGCTAGAGGATTTGTTGGTGTGACTGAGCGTGCTCGTT ATTTTGGTCGGATGCGTAGTTTAGCTCGTCAGTGTGCTGAACTTTGGTTGAAGGCCAGGGAGTCGCTGGGATACCCACTGGGTATCGTATCTGAACCTGC TGATTCTACATGTTCTCAACAGTTTGTGGAGGTGGAAGACAACAACATGATTCTCAATGACAAAAGGTCATTTGTTCTTGAAATTGGCACTGAAGAGTTG CCTCCACTTGATGTAGTTCATGGCACCGAGCAGCTTGAAAGTCTAATGTTTAAATTACTAGAGAAACAAAGATTAGGCTATGGCAAGATTCAAGTGTTTG GCACCCCTCGCAGATTGGTGGTCTTGGTGGAGAACCTGTGCTCTAAGCAGTCAGAAAGTGAGGTCGAGGTTAGAGGTCCTCCAGTTTCAAAGGCATTTGA TGGGCAGGGAAATCCTACAAAGGCTGCCGAGGGCTTTTGTCGTAGATACGATGTATCGCTGGACTCTTTGTTTAGAAAGATTGAAGGGAAAACTGAGTAC ATTCATGCCCTTGTAAAGAAGACGGCTCGGAGGACATCAGAGATCTTGAGTGAAGATTTACCTGGTATAATCAGTAAATTATCATTCCCGAAGTCCATGC GTTGGAACTCTCAGGTCATGTTCAGCAGGCCAATTCGCTGGGTTATGGCCTTGCATGGAGACACTGTTGTTCCATTCACATTTGTGGGAGTTTCGAGTGG AAACCTATCGTATGGTCTTCGCAACTACCCTTCATCTACAATTCAGGTCAAGAGTGCTGAATCCTATGCAAGTGCATTGATGACTGCTGGAATTAATATT GTTATTGAGGATCGAAAGAAAAGCATCTTGGAGCAGTCAAATTTATTGGCAGAAAGTGTCAATGGTCGTCTCTTGGTCCAGGAAAACTTGCTTCATGAGG TAGTTAATCTTGTTGAGGCACCAGTAGCCGTGCTTGGAAAGTTTAAAGAGTCGTTTTTGGAGCTTCCAGATGATCTCTTAACAATGGTCATGCAGAAGCA CCAGAAGTATTTTGCAATCACTGATGATGGCGGAAAGCTACTTCCTTACTTCATTGCTGTAGCAAATGGGCCCATAAACGAGATGGTGGTTAGAGAAGGG AATGAAGCTGTGCTTAGAGCACGCTATGAAGATGCTAAATTTTTCTATGAGATGGATACTCGAAGGAGTTTCTCGGAGTTTCAAAGTCAGTTAAAAGGGA TACTTTTCCATGAGAAGCTCGGGACAATGCTTGACAAGGTAGTTCGCATGCAAAAAATGGTTGGAAATTTGAGTTTGGAGTTGGGTAATGGTGAAGTCAT GTTTCAAACTGTCAAGGATGCCACGTCACTAGCAATGTCGGATCTTGCTACTGCAGTAGTAACAGAATTCACTGCGCTTTCTGGAATAATGGCACGCCAT TATGCTCTAAGAGATGGATATTCGGAGCAGATTGCGGAGGCATTGTTCGAAATCACCCTTCCAAGATTTTCTGGCGACGTTCTTCCAAAAAGTGACGTGG GGATTGTTTTGGCAATTGCTGACAGATTAGACAGCCTTGTTGGTTTATTTGCTGCCGGATGCCGGCCTAGTTCTACTAATGACCCATTTGGACTGAGAAG AATCTCATATGGCCTGGTTCAGATATTGGTGGAAAGGGAGAAAGATTTGGATTTGCATCTCGCTATAACACTTGCTGCAGCGGTGCAACCTATACCTGTT GATGCTCATATAATAGATGACGCACATGCATTTGTTACTCGAAGATTAGAGCAATTCTTGGTTGACAAGGGAATAAGTTCGGAATTGGTCCGTTCTGCCT TGGCTGAGCGTGGGAATTCCCCTTATCTGGCAGCCAAAACAGCATCAAAAGTGCTGATAGATACTCTACAGATGCAAATGTTATCAGAAGGTCATCTATT CCCTAAGGTGGTTGAAGCATACTCTCGTCCCACTAGAATAGTTCGAGGAAAGGACTTTGATTCCAGTTACCAGGTGAATGACACGAAATTCGAGACAAAT GAAGAGAGAGCCTTGTGGAAGACTTTCTTGTCCACAAGAAGCAAAATTCACCCTGGCATCGAGGTGGACGAATTCGTTGAAGTTTCTTCGGAGCTGGTAC AGCCGTTAGAGGATTTCTTCAATAATGTCTTCGTCATGGTGGAAGACGAAAACGTACGAAACAACAGGCTTGCGCTACTTGCGCAAATTGCGGATCTTCC CAGAGGCATTGTGGACCTGTCACTCTTGCCAGGGTTTTAG
AA sequence Show only first row Show all	>Lus10028211 pacid=23166449 polypeptide=Lus10028211 locus=Lus10028211.g ID=Lus10028211.BGIv1.0 annot-version=v1.0 MAILALPLVISVLKPQASRFLFLCSVGDLNPNRFRLSRRHFRRTTVSSLSTSAFQQLQSSTEPKSEPRKDTSLTFQQAIQRLQASDYWASVGCAVMQCSN TEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGINVNDHDIRFVEDNWESPVLGAWGLG WEIWMDGMEITQFTYFQQAGSLQLSPISVEITYGLERILMLLQGVDHFKKIQYADGITYGELFSENEKEMSAYYLEHASVQQLQNHFDLFEAEARSLLAL GLAIPAYDQLLKTSHAFNILDARGFVGVTERARYFGRMRSLARQCAELWLKARESLGYPLGIVSEPADSTCSQQFVEVEDNNMILNDKRSFVLEIGTEEL PPLDVVHGTEQLESLMFKLLEKQRLGYGKIQVFGTPRRLVVLVENLCSKQSESEVEVRGPPVSKAFDGQGNPTKAAEGFCRRYDVSLDSLFRKIEGKTEY IHALVKKTARRTSEILSEDLPGIISKLSFPKSMRWNSQVMFSRPIRWVMALHGDTVVPFTFVGVSSGNLSYGLRNYPSSTIQVKSAESYASALMTAGINI VIEDRKKSILEQSNLLAESVNGRLLVQENLLHEVVNLVEAPVAVLGKFKESFLELPDDLLTMVMQKHQKYFAITDDGGKLLPYFIAVANGPINEMVVREG NEAVLRARYEDAKFFYEMDTRRSFSEFQSQLKGILFHEKLGTMLDKVVRMQKMVGNLSLELGNGEVMFQTVKDATSLAMSDLATAVVTEFTALSGIMARH YALRDGYSEQIAEALFEITLPRFSGDVLPKSDVGIVLAIADRLDSLVGLFAAGCRPSSTNDPFGLRRISYGLVQILVEREKDLDLHLAITLAAAVQPIPV DAHIIDDAHAFVTRRLEQFLVDKGISSELVRSALAERGNSPYLAAKTASKVLIDTLQMQMLSEGHLFPKVVEAYSRPTRIVRGKDFDSSYQVNDTKFETN EERALWKTFLSTRSKIHPGIEVDEFVEVSSELVQPLEDFFNNVFVMVEDENVRNNRLALLAQIADLPRGIVDLSLLPGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10028211 [exp]	0	1
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	2.6	0.9275
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	4.5	0.9065
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	4.9	0.8875
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	9.5	0.9009
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	13.9	0.8893
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	19.0	0.8784
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	21.2	0.8670
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	26.5	0.8885
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	27.8	0.8770
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	28.3	0.8762

Compare expression of checked genes

Lus10028211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.