Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09890 962 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 880 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 833 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 775 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 719 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 694 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G37950 676 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 224 / 7e-69 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000684 [exp] 798 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 739 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 726 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 686 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 684 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 673 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10030232 [exp] 638 / 0 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10029552 [exp] 626 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 626 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110000 [exp] 1018 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 952 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 950 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 929 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 835 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 767 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 753 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 669 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10028212 pacid=23166490 polypeptide=Lus10028212 locus=Lus10028212.g ID=Lus10028212.BGIv1.0 annot-version=v1.0 ATGGAACCAACAGGAGTGCAACTCCATATCAACGATCGCCATGTGGTGATGGATAATGGGATTGTACAAGTGACGATGTCGAATCCTCAAGGCATAGTGA CTGGGATTCGTTTCGGTGGGCTCGACAATCTGCTCGAAGTCCTTAACGAGGAAACCAATCGAGGGTACTGGGACCTCGTATGGAGCTCACCAGGGACTGC AGGAACCTTTGACGTAATAAAAGGGACGAGTTTTGAGGTGATAACAGAAACAGAAGAACAAGTGGAGGTATCATTCACAAGGAAATGGGATCCATCCCTA AAGGGAAAGCAAGTTCCCTTGAACATAGACAAAAGGTTCATCATGTTGAGTGGGAGCTCTGGTTTCTACTCCTACGCAATCTACCACCACCTCCAAGATT GGCCCGCTTTCAGCCTCGCCGAGACCAGGATCGCTTTCAAGCTCAGGAAAGACAAGTTTCATTACATGGCTGCATCGGAAAACAGACAAAGATACATGCC CCTTCCGGATGACAGAATCCCTCCTAGAGGTCAACCATTAGCGTACCCTGAAGCAGTGTTGATGGTCAACCCTGTGGAGGTTGAATTAAAGGGTGAGGTG GACGACAAGTACCAATACTCTTGTGACAACAAGGACAATAAGGTCCATGGTTGGATGTGTATGGACCCACCTATTGGCTTTTGGCAAATTACTCCTACCG ACGAGTTTCGATCCGGCGGCCCTGTCAAACAGAACCTTACTTCCCATGTTGGTCCAACCACACTTGCAATGTTCCTTAGTGCACACTACGCAGGAGAAGA TTTGGTGCCCAAATTCGGAGAAGGAGAAGAATGGAAGAAGGTTTTTGGACCCATTTTTATGTATTTCAATACCACTTCTCCTATAGACGATGATATTCCT CCTTCACTATGGGAGGATGCCAAGTCTCAGATGATGGCAGAGGTAGAGAGTTGGCCCTACACTTTTCCAGCTTCAGATGACTACCAAAAGCTTCAGCAAC GTGGGAATGTCACCGGCAGACTCCTTGTTCATGACAGGTTCGTTTCAGATGATTCTATATATGCAAGTGGAGCCTACGTTGGATTGGCACCTCCTGGAGA TGTTGGATCTTGGCAAAGAGAATGCAAGAATTATCAATTCTGGACTAAAACAGACGAGGATGGCTTCTTCTCCATTAACCATATCATCACTGGTGACTAC AATCTCTACGCTTGGGTTCCAGGCTTTATTGGAGACTACAAGAATCTCAACCTTGTTTCCATCACCTCAGGTTGCTACGTTGACATGGGAGATATGGTTT TCGAGCCCCCGCGAAATGGTCCTACGCTATGGGAAATTGGCATTCCTGATCGATCTGCCTCGGAATTCTATGTTCCTGATCCTAATCCCAAGTACATCAA TAAGCTCTTTGTCAATCATCCTGAAAAGTTCAGGCAATATGGTTTATGGGAGAGATATGAAGAATTATACCCAAATGAGGACTTGGTCTATAATGTTGGA ACTAGTGATTATACTAAAGACTGGTTTTTTGCTCAGGTCACCAGGAAGAGAGAAAACAACACATATCAAGGAACCACTTGGAGTATCAAGTTCGCTCTCG ACAATGTTGAGAAGAACGGAATCTACAAGCTACGAGTCGCGATTGCCTCTGCAACCTTTTCAGAACTGCAGGTTAGGATTAATGATCCAAAAGTTGTGCC GGTGTTTTCGAGTGGATTGATCGGGAGGGATAATTCGATAGCAAGGCATGGAATCCATGGACTGTACTGGCTGTTTAATGTGGATGTAGCGGGAAGCAAG CTTGTTGCAGGGATAAACACAATATATTTGACTCAGCCAAGAGCTACTAGTCCTTTCCAAGGGATTATGTATGACTACATTCGTCTGGAAGCCCCTTCAT TTTCAACATCTGTCGACAGTTTCAAGAAAGCCACCAACGTGTGA
AA sequence Show only first row Show all	>Lus10028212 pacid=23166490 polypeptide=Lus10028212 locus=Lus10028212.g ID=Lus10028212.BGIv1.0 annot-version=v1.0 MEPTGVQLHINDRHVVMDNGIVQVTMSNPQGIVTGIRFGGLDNLLEVLNEETNRGYWDLVWSSPGTAGTFDVIKGTSFEVITETEEQVEVSFTRKWDPSL KGKQVPLNIDKRFIMLSGSSGFYSYAIYHHLQDWPAFSLAETRIAFKLRKDKFHYMAASENRQRYMPLPDDRIPPRGQPLAYPEAVLMVNPVEVELKGEV DDKYQYSCDNKDNKVHGWMCMDPPIGFWQITPTDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYAGEDLVPKFGEGEEWKKVFGPIFMYFNTTSPIDDDIP PSLWEDAKSQMMAEVESWPYTFPASDDYQKLQQRGNVTGRLLVHDRFVSDDSIYASGAYVGLAPPGDVGSWQRECKNYQFWTKTDEDGFFSINHIITGDY NLYAWVPGFIGDYKNLNLVSITSGCYVDMGDMVFEPPRNGPTLWEIGIPDRSASEFYVPDPNPKYINKLFVNHPEKFRQYGLWERYEELYPNEDLVYNVG TSDYTKDWFFAQVTRKRENNTYQGTTWSIKFALDNVEKNGIYKLRVAIASATFSELQVRINDPKVVPVFSSGLIGRDNSIARHGIHGLYWLFNVDVAGSK LVAGINTIYLTQPRATSPFQGIMYDYIRLEAPSFSTSVDSFKKATNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	2.0	0.9513
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	4.8	0.9043
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	6.6	0.9465
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	7.3	0.9436
AT4G26890		MAPKKK16	mitogen-activated protein kina...		Lus10022951 [exp]	7.5	0.8772
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	8.7	0.9414
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	9.2	0.9351
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	11.2	0.9403
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	12.8	0.9125
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	13.4	0.9067

Compare expression of checked genes

Lus10028212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.