Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09920 244 / 6e-83 TRAF-type zinc finger-related (.1) AT4G15420 67 / 6e-13 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042917 [exp] 384 / 6e-138 AT1G09920 257 / 4e-88 TRAF-type zinc finger-related (.1) Lus10031538 [exp] 60 / 2e-10 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 60 / 2e-10 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109800 [exp] 306 / 5e-107 AT1G09920 273 / 1e-94 TRAF-type zinc finger-related (.1) Potri.014G156300 [exp] 62 / 3e-11 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028213 pacid=23166403 polypeptide=Lus10028213 locus=Lus10028213.g ID=Lus10028213.BGIv1.0 annot-version=v1.0 ATGGCAATGGCATCTGAGGAGTCTACAAGCATTTGTATCCACTGTGATCGAGCTATCCCTTCTTCAAATCTTGATCTGCATATGGTACACTGCGCCAGGA ATCTCGAAAAATGCAAACTTTGTGGAGATATGGTACCAAAACGCCATTCTGAAGAACATTACTTGAACACTCATGCTCCGGTATCTTGTTCACTCTGCAG TGAGACAATGGAACCGGACATGTTAGGTGTACATAAAGGTGAAAACTGCCCCCAAAGAATTGTCACATGCGAGTTCTGTGAATTCCCGTTGCCTGCAATT GATTTGGCTGAGCATCAGGAGGTTTGTGGGAACCGGACAGAACTGTGTCACTTGTGTAGTAGATATATAAGACTAAGAGAGAGGATCAACCATGAGAGTA GATGCACCGGTGTTCCAGACGATACTGTTGGCTCTTCCAGGGATGCAAATCGATATCCAGCAACGGAAAGAGCACGCGGAGGAGCTGGAGCAGGAGGAGG CCGTCCAAGACAGGAGTACTCGCTGAAACGAATGTTGTTAACTGTGGCAATAACAAGCATTGCTGTTGTGTTGGGATCATTTGTTTTCCAGAAAAGAAGA GAAGGGGATCAAGTTAATTAA
AA sequence Show only first row Show all	>Lus10028213 pacid=23166403 polypeptide=Lus10028213 locus=Lus10028213.g ID=Lus10028213.BGIv1.0 annot-version=v1.0 MAMASEESTSICIHCDRAIPSSNLDLHMVHCARNLEKCKLCGDMVPKRHSEEHYLNTHAPVSCSLCSETMEPDMLGVHKGENCPQRIVTCEFCEFPLPAI DLAEHQEVCGNRTELCHLCSRYIRLRERINHESRCTGVPDDTVGSSRDANRYPATERARGGAGAGGGRPRQEYSLKRMLLTVAITSIAVVLGSFVFQKRR EGDQVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	0	1
AT5G12240			unknown protein		Lus10026824 [exp]	2.2	0.8879
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	4.5	0.8608
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	4.9	0.8730
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	5.7	0.8764
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	9.8	0.8687
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	9.8	0.8464
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	11.5	0.8474
AT2G20410			RNA-binding ASCH domain protei...		Lus10014656 [exp]	12.5	0.8530
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	13.3	0.8763
AT1G28250			unknown protein		Lus10014006 [exp]	13.8	0.8320

Compare expression of checked genes

Lus10028213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.