Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57230 164 / 5e-52 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 154 / 2e-48 MADS AGL21 AGAMOUS-like 21 (.1) AT2G22630 139 / 1e-42 MADS AGL17 AGAMOUS-like 17 (.1) AT2G14210 122 / 9e-36 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT4G18960 75 / 3e-17 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 71 / 6e-16 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G26310 71 / 7e-16 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT1G69120 69 / 4e-15 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT2G42830 67 / 1e-14 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45650 62 / 1e-12 MADS AGL6 AGAMOUS-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042919 [exp] 152 / 8e-49 AT3G57230 162 / 6e-51 AGAMOUS-like 16 (.1.2) Lus10007100 [exp] 132 / 9e-40 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10020477 [exp] 102 / 5e-29 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10029557 [exp] 89 / 1e-23 AT3G57230 106 / 3e-29 AGAMOUS-like 16 (.1.2) Lus10034662 [exp] 72 / 3e-16 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10005302 [exp] 72 / 4e-16 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10017871 [exp] 69 / 1e-15 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10041385 [exp] 69 / 1e-15 AT2G45660 140 / 5e-42 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10009481 [exp] 70 / 3e-15 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G150501 [exp] 192 / 8e-63 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G109601 [exp] 189 / 2e-62 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 170 / 2e-54 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 155 / 7e-49 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 155 / 7e-49 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.004G064300 [exp] 77 / 2e-18 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 76 / 1e-17 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 70 / 1e-15 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.012G062300 [exp] 69 / 3e-15 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.019G077200 [exp] 67 / 2e-14 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10028215 pacid=23166503 polypeptide=Lus10028215 locus=Lus10028215.g ID=Lus10028215.BGIv1.0 annot-version=v1.0 ATGAAGTCTGTAATCGAAAGATACAAGAAGACTAAAGAGGAAAATAATCAATTGGGTAATCCCACTTCTGAAGTTAAGTTCTGGCAAAGAGAGGCAGCAA TGTTGAGGCAGCAACTTCAGAACCTGCAAGAAAATCATAGGCAAATGATGGGTGAGGAGCTTTCTGGTTTGAATATAAAGGATTTACAGAACTTAGAAAA CCAATTGGAGATGAGTCTTAGAGGGGTTCGGATGAGAAAGGACCAAATTTTAATGGACGAGATACAAGAATTAAACACAAAGGGTAACCTCATCCACCAG GAAAACATGGAGCTCTATAAGAAGGTAAATGTGTTGAATTACAGAAATAACTAG
AA sequence Show only first row Show all	>Lus10028215 pacid=23166503 polypeptide=Lus10028215 locus=Lus10028215.g ID=Lus10028215.BGIv1.0 annot-version=v1.0 MKSVIERYKKTKEENNQLGNPTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGLNIKDLQNLENQLEMSLRGVRMRKDQILMDEIQELNTKGNLIHQ ENMELYKKVNVLNYRNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10028215 [exp]	0	1
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	1.7	0.9462
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	2.4	0.9334
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	3.5	0.9409
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	6.9	0.9299
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	10.2	0.9298
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	12.5	0.9236
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10026643 [exp]	12.7	0.9046
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	13.0	0.8976
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	15.9	0.9110
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	18.5	0.9173

Compare expression of checked genes

Lus10028215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.