Plant FIBer expression Database

Lus10028216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08170 584 / 0 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042920
[exp]
766 / 0 AT5G08170 582 / 0.0 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G055300
[exp]
634 / 0 AT5G08170 594 / 0.0 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0197 GME PF04371 PAD_porph Porphyromonas-type peptidyl-arginine deiminase
Representative CDS sequence
>Lus10028216 pacid=23166500 polypeptide=Lus10028216 locus=Lus10028216.g ID=Lus10028216.BGIv1.0 annot-version=v1.0
ATGGTCGACTTGAAAGGATCACCGGATCTCCATGGATATAAGATGCCTGCCGAGTGGGAGCCTCATTCTCAAACTTGGATGGGTTGGCCTGAGCGGCCAG
ATAACTGGCGGGATGCTGCTGCGCATGGTCAACATACTTTCACCAAGGTCGCAATTGCTATTTCAAAGTTCGAACCAGTGACTGTTTGTGCAAGTGCTGC
ACAGTGGGAGAATGCTAGGACTCAGCTCCCAGAACACATTCGAGTCGTTGAGATGAGCATGAATGACAGCTGGTTTCGTGATAGTGGTCCAACATTTGTC
ATAAGGAAGAGCGTTTCGGGCTCCAACATTTCGGAGCAAGAGATTGCAGGCATCGACTGGAACTTCAATAGTTGGGGAGGAGTTGACGAGGGTTGTTACC
AAGATTGGAGTCTGGACACTGCTGTCGCATCAAAGATTCTTGAAATTGAGAGGTGCCCAAGGTTTCGCCATACTATGATTCTTGAAGGTGGAAGCATCCA
TGTCGATGGAGAAGGAACATGCCTTACCACTGAGGAATGCCTCTTAAACAAGAACAGGAATCCTCATCTTACAAAGGAACAAATAGAAGATGAACTGAAG
AAGTATCTAGGAGTTCGTACGATTATTTGGTTGCCTCGTGGATTATATGGGGATGATGACACAAATGGTCATATTGACAATATGTGCTGCTTTGCAAGAC
CGGGCGTGGTTTTGTTGTCTTGGACCGATGATGAAAAGGATCCTCATTATGAAAGAGCAGTAGAAGCCTTTTCTGCTCTGTCTAGTGCAACTGATGCTAA
TGGCAGGAAGCTAGAGATTGTCAAGCTTCATGTACCAGGACCGCTTTACATGACAGAAGAAGAAGGAAATGGGTTTGCTCAAGACGGTGATGGTAAATCA
AGAGTTTCAGGTACAAGACTTGCTGCTTCTTATGTGAACTTCTATTTCGCGAATGGAGGGATAATCGTACCGCAATTTGGTGACAAAAAATGGGACGATG
AAGCAATTCGAGTCCTCTCTCTCGCCTTCCCAAATCATGAAGTGGTTGGAATCGAAGGCGCAAGGGAGATAGTTCTGGGTGGTGGAAACATACATTGCAT
CACCCAGCAACAACCAGTAAGTTTTCCTGGTGATAAAGCTTAA
AA sequence
>Lus10028216 pacid=23166500 polypeptide=Lus10028216 locus=Lus10028216.g ID=Lus10028216.BGIv1.0 annot-version=v1.0
MVDLKGSPDLHGYKMPAEWEPHSQTWMGWPERPDNWRDAAAHGQHTFTKVAIAISKFEPVTVCASAAQWENARTQLPEHIRVVEMSMNDSWFRDSGPTFV
IRKSVSGSNISEQEIAGIDWNFNSWGGVDEGCYQDWSLDTAVASKILEIERCPRFRHTMILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIEDELK
KYLGVRTIIWLPRGLYGDDDTNGHIDNMCCFARPGVVLLSWTDDEKDPHYERAVEAFSALSSATDANGRKLEIVKLHVPGPLYMTEEEGNGFAQDGDGKS
RVSGTRLAASYVNFYFANGGIIVPQFGDKKWDDEAIRVLSLAFPNHEVVGIEGAREIVLGGGNIHCITQQQPVSFPGDKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G08170 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATIN... Lus10028216
[exp]
0 1
AT4G04720 CPK21 calcium-dependent protein kina... Lus10002075
[exp]
12.3 0.8869
AT2G17080 Arabidopsis protein of unknown... Lus10023965
[exp]
20.1 0.8769
AT5G56040 Leucine-rich receptor-like pro... Lus10018094
[exp]
23.7 0.8758
AT2G03760 AtSOT12, AtSOT1... ARABIDOPSIS THALIANA SULFOTRAN... Lus10031623
[exp]
28.8 0.8741
AT2G17080 Arabidopsis protein of unknown... Lus10025126
[exp]
30.9 0.8750
AT2G17080 Arabidopsis protein of unknown... Lus10023964
[exp]
35.7 0.8724
AT5G14920 Gibberellin-regulated family p... Lus10032168
[exp]
45.9 0.8692
AT3G10120 unknown protein Lus10027167
[exp]
46.9 0.8666
AT3G56210 ARM repeat superfamily protein... Lus10017416
[exp]
47.4 0.8675
AT3G09270 ATGSTU8 glutathione S-transferase TAU ... Lus10021103
[exp]
48.5 0.8686

Lus10028216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.