Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 292 / 2e-95 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 291 / 3e-95 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 280 / 9e-91 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 237 / 4e-74 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 227 / 2e-70 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 191 / 7e-57 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G66540 184 / 6e-56 Cytochrome P450 superfamily protein (.1.2) AT2G42250 180 / 1e-52 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT4G37340 179 / 2e-52 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT2G45570 179 / 3e-52 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035635 [exp] 550 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 467 / 5e-159 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 447 / 9e-156 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 398 / 5e-138 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10032745 [exp] 297 / 2e-97 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 291 / 2e-95 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 269 / 2e-86 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 268 / 3e-86 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 268 / 4e-86 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038100 [exp] 360 / 6e-122 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 352 / 1e-118 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 346 / 3e-116 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 330 / 4e-110 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 326 / 1e-108 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 324 / 8e-108 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 320 / 2e-106 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 317 / 3e-105 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 292 / 1e-95 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 289 / 2e-94 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028217 pacid=23166567 polypeptide=Lus10028217 locus=Lus10028217.g ID=Lus10028217.BGIv1.0 annot-version=v1.0 ATGACCACCTGGTTCGGGGACATTGCGTTGAACGTTATACTGGAGATGATCGTAGGGGCATCTATAGGGTATTTGAAGCGAGGAGAAGACGGCGTTAGAA TGAAGAAAGTGTTGAATAGTTTCTTTGAACTTGCCGGAAGGTTCGTGGTGGCGGACGGTATACCTTATCTGAGGTGGTTGGACGTGGGAGGGTTCGAGAA GGCGATGAGGAAGACACGGGAGGAGATGGACGTTATGATGGGAGTGTGGCTGAAGGAGCATAAGGCAAAAAGAGATTCCAACGGCGGGGTCAAGGTGGAA GACGACTTCATGGACGTTATTCTGAATCTTAGTCTTATCCTAGCGGGTGCAGACACAATAACAATGACGATGACCTGGTTGCTTGCATTACTCGTGAACC ATCCCGACCTATTGCATAAAGCCCAAATTGAACTGGTCAACAACATAGATGACCAAAGACAAGTTCAAGAGTCAGATCTCGACAACTTAGTTTACCTGAA TGCAATCGTCAAAGAAACCCTCCGCTTGTACCCACCTGGTCCTCTTGCCGTACCCCACCAAGCCATTGAAGATTGCACAGTCGGTGATTGTCTGGTCCGA AAAGGGACTAGACTAATAATCAACATATCTAAAATCCAGCGCGACCAAAGGGTTTGGTTCGAAGCAGACAAGTTTGAACCGGATCGGTTCCTCTCGACAC ATAAAGACGTTGACCTCAAGGGTAAAAACTTGGAGTTGATGCCATTCGGAAGCGGGCGAAGGATGTGTCCGGCAGTAAACTTTGCCCTCCAGATCATGCA TTTGACGCTGGCTAGACTTCTACATGAATTTGACTTTAAGAGAATATCTATGCAACTTGTCAACATGACAGAGAGTATCGGACTGACTAATCCTCCAGCT TCTCCTCTTGAAGTTATCTTATCTCCCCGCCTGCCTCCTCATTTGTACGGGTAA
AA sequence Show only first row Show all	>Lus10028217 pacid=23166567 polypeptide=Lus10028217 locus=Lus10028217.g ID=Lus10028217.BGIv1.0 annot-version=v1.0 MTTWFGDIALNVILEMIVGASIGYLKRGEDGVRMKKVLNSFFELAGRFVVADGIPYLRWLDVGGFEKAMRKTREEMDVMMGVWLKEHKAKRDSNGGVKVE DDFMDVILNLSLILAGADTITMTMTWLLALLVNHPDLLHKAQIELVNNIDDQRQVQESDLDNLVYLNAIVKETLRLYPPGPLAVPHQAIEDCTVGDCLVR KGTRLIINISKIQRDQRVWFEADKFEPDRFLSTHKDVDLKGKNLELMPFGSGRRMCPAVNFALQIMHLTLARLLHEFDFKRISMQLVNMTESIGLTNPPA SPLEVILSPRLPPHLYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	0	1
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	3.5	0.8483
					Lus10010697 [exp]	3.7	0.8692
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	5.3	0.8692
AT5G20610			unknown protein		Lus10025003 [exp]	6.5	0.8692
					Lus10008327 [exp]	7.5	0.8692
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	8.4	0.8692
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	9.9	0.8444
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	10.6	0.8231
					Lus10024618 [exp]	11.6	0.8225
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	12.0	0.8206

Compare expression of checked genes

Lus10028217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.