Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28670 450 / 4e-155 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042926 [exp] 810 / 0 AT3G28670 484 / 2e-168 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108700 [exp] 553 / 0 AT3G28670 501 / 4e-175 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028219 pacid=23166573 polypeptide=Lus10028219 locus=Lus10028219.g ID=Lus10028219.BGIv1.0 annot-version=v1.0 ATGGTGAAGGTGGTAGTAGGAGACGAAATTCAACTCAAATTGGCAGAGGACCGCCTTACTCATTCTGGTTTCACCGCCCAGGTCGGCTTGGTGATTGGAA AGCTCAGTTCCCAATTGGACCGAGGTTTCGTCTTCGATTTGGTTCCCACTCCGTTGAACGACGCCGGCGAGCCCGCCTGTTCGGTCGTCGACACCAAAGA TGACAAGGATAAGACTGGTTCCAAATCCAAATCGCAAGTCTCTGATGCTTCAACTTTGCTTATCGGCATGGACTGGGTAGCTGAACACGCTCGCCAGGTT TCCAGAATGTTGGTAGGCGGGATGAACGTGGTGGGAGTTTATGTTTGGGTTACTGATACATCATTCAAGAACTCAACCATTACCCTTTGCCAGACAGTGC AAGGAGTTGCAGAAGCCGCCCCTATTCTAGAGGGGGATTTGGATCAAAGGCTGCTTCTTCATATATCTTATAGTCCCAGAAGGTGGACGTGTCGGAATTG TATGTTGTCTTCAAGCATCACATCAAGCAGCATACGCCCCTGTGATTTCAAACTAGGGAAGGTCTTAAACTCTGTACAGAGATTTAGGTGCATTTACAAA TTTGAACTCAGATTGCCAATTTCTGGTGAACTTGCATCAAATGGTTCAACACTGAGTGCAGTTCTTCGTCATGGAATCTCAACTATTGGGAAACAGCTAA GAGGTGCAAAGGCTATTATTGATGGAAAGTTGATCAAAAGTGACGAGCCATGCACAACCGATTGTTTACATGAAGTTGAATTGCTTCTGCCGTTCACAGA AAGTGACCCTTATACCGAAGCATGCAGTGGAAAGGATGTAGACGGTCTTCTTGTTTTTGGTGGATCTGTTTCCTCTTTCACATATGTCAACACCAAAGAA CCAGTTTCACAGGCCGTTGCTGACATAAAGTTTGATATAGTCAGAAGTCTGCAAAGCAGACTGGATATGATATGTGTTGGAGTAGATGAAGATCGTGCTG AAAAAGATGAAGGCCGTGAGGATGCAATCAATAACAAACCGTCTCAAAAACCCATTTCCAGACTTGTCCTCCACTCTTTAAGGAAAACATGCCGACTTGC CTTTCCGCGAAGAGTCTTCATTCCATGGTTGGCTGATATATACATTTGCGACTACCTGCAACCTTCAGAGACGCTTGAGGTGATAAACAATCATTGTGTA GAGTTGATGTCGATGCAAGCCCCAAGTGATAGCTCAACATTCCTGCAGCCAGAAGAGGAAGCTCCATTTGTTATCTCCAAATCTTGTTTGGATAAGAAGA GAGAAGTTGATGCAAGTGCAGATAGTAGCACCAGACAAACAACCGAGTCCTTTAGCTTTAGCTTGGTTTTGACGAAGATACCGTACAGTTTGTTTGGTAT TCTTATTACTAGGAAGAATGACAATTGA
AA sequence Show only first row Show all	>Lus10028219 pacid=23166573 polypeptide=Lus10028219 locus=Lus10028219.g ID=Lus10028219.BGIv1.0 annot-version=v1.0 MVKVVVGDEIQLKLAEDRLTHSGFTAQVGLVIGKLSSQLDRGFVFDLVPTPLNDAGEPACSVVDTKDDKDKTGSKSKSQVSDASTLLIGMDWVAEHARQV SRMLVGGMNVVGVYVWVTDTSFKNSTITLCQTVQGVAEAAPILEGDLDQRLLLHISYSPRRWTCRNCMLSSSITSSSIRPCDFKLGKVLNSVQRFRCIYK FELRLPISGELASNGSTLSAVLRHGISTIGKQLRGAKAIIDGKLIKSDEPCTTDCLHEVELLLPFTESDPYTEACSGKDVDGLLVFGGSVSSFTYVNTKE PVSQAVADIKFDIVRSLQSRLDMICVGVDEDRAEKDEGREDAINNKPSQKPISRLVLHSLRKTCRLAFPRRVFIPWLADIYICDYLQPSETLEVINNHCV ELMSMQAPSDSSTFLQPEEEAPFVISKSCLDKKREVDASADSSTRQTTESFSFSLVLTKIPYSLFGILITRKNDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28670			oxidoreductase, zinc-binding d...		Lus10028219 [exp]	0	1
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	13.2	0.7535
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	15.9	0.7323
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	23.3	0.7309
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	23.6	0.7110
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	36.5	0.6694
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	44.9	0.7098
AT1G17400			unknown protein		Lus10027660 [exp]	46.1	0.6171
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	49.4	0.7048
AT2G28130			unknown protein		Lus10021421 [exp]	49.4	0.7002
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	61.2	0.6967

Compare expression of checked genes

Lus10028219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.