Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22670 305 / 1e-103 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 301 / 6e-102 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT4G29080 257 / 4e-85 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT4G14550 212 / 2e-68 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G04730 202 / 1e-64 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 201 / 6e-64 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 196 / 5e-62 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 180 / 2e-56 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 172 / 2e-53 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 153 / 5e-46 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042929 [exp] 316 / 3e-107 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10019241 [exp] 293 / 3e-99 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10011583 [exp] 275 / 4e-92 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 243 / 2e-79 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10012984 [exp] 231 / 2e-74 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10039413 [exp] 196 / 2e-62 AT1G04240 250 / 2e-85 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) Lus10039414 [exp] 197 / 3e-62 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10039488 [exp] 191 / 1e-60 AT5G43700 247 / 3e-84 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Lus10015907 [exp] 193 / 2e-60 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108000 [exp] 290 / 2e-97 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.006G161400 [exp] 258 / 2e-85 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.003G051300 [exp] 254 / 3e-83 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 243 / 7e-79 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.005G053900 [exp] 223 / 2e-72 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.013G041400 [exp] 222 / 4e-72 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 214 / 6e-69 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 213 / 1e-68 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 208 / 5e-67 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 209 / 1e-66 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10028222 pacid=23166436 polypeptide=Lus10028222 locus=Lus10028222.g ID=Lus10028222.BGIv1.0 annot-version=v1.0 ATGACTCCGCCACTGCTTGGTGGTGTGGAGGAGGGTCAAATCAATGCTTCTCTGCTTGCTTCTTCGACATCCTTGGAAAGTGTTTGCCAAAATGGGTCTG CTGAATTGAAAGAGCGCAACTACATGGGGCTTTCTGATTCATCTTCGTCTGGAGATAGCTCTGTTATCTCTGCCGTGACCGGTGAAAGCAAGGCTCGGCT GAACCTTAAGGCGACAGAACTTCGGCTTGGGTTACCAGGATCTCAATCACCTGAAAGGAATTCCGAGCTTTGCTTATTTGGATCCACTAAACTCGATGAA AAGCCCCTCTTCCCTTTGCATCCAGTAAACGAGAGCAATGGATCTTCCACGCCGAAAACTTTACTTTTGGGGAACAAAAGAGGATCAAGCAACAGCCCAG CACCGGCGACTAAGGCACAAGTTGTGGGCTGGCCTCCTATCAGGTCCTTTAGGAAGAACTCACTTGCTACGTCCAAGAATACTGAGGAAGTAGATGGAAA GGCAGGTTCTACTGCTTTGTACGTTAAAGTGAGCATGGATGGTGCCCCTTATCTGAGGAAGGTTGACTTGAGGAACTATTCTGCATACAAGGAACTCTCT TCAGCTCTTGAGAAGATGTTCAGTTGTTTTACCATAGGTCAATATGGATCCCATGGAGCCTCAGGAAGGGAGGTGCTGACTGAAAGCAAGTTGAAAGATC TTCTGCATGGTTCAGAATATGTTCTCACCTACGAGGATAAAGATGGTGACTGGATGCTCGTTGGTGATGTTCCCTGGGAGATGTTTATTGAGACCTGCAA GAGGTTGAGGATCATGAAGGGTTCTGACGCCATTGGTTTAGGTGGGTTTGTTATTTCATGA
AA sequence Show only first row Show all	>Lus10028222 pacid=23166436 polypeptide=Lus10028222 locus=Lus10028222.g ID=Lus10028222.BGIv1.0 annot-version=v1.0 MTPPLLGGVEEGQINASLLASSTSLESVCQNGSAELKERNYMGLSDSSSSGDSSVISAVTGESKARLNLKATELRLGLPGSQSPERNSELCLFGSTKLDE KPLFPLHPVNESNGSSTPKTLLLGNKRGSSNSPAPATKAQVVGWPPIRSFRKNSLATSKNTEEVDGKAGSTALYVKVSMDGAPYLRKVDLRNYSAYKELS SALEKMFSCFTIGQYGSHGASGREVLTESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKGSDAIGLGGFVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10028222 [exp]	0	1
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	4.9	0.7344
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	5.7	0.7814
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037910 [exp]	16.4	0.7168
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	21.5	0.7403
AT1G28100			unknown protein		Lus10001800 [exp]	22.2	0.7153
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	25.1	0.7336
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	32.1	0.6852
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	32.1	0.7269
AT5G50335			unknown protein		Lus10001469 [exp]	32.5	0.7426
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10023998 [exp]	35.7	0.6845

Compare expression of checked genes

Lus10028222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.