Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042930 [exp] 51 / 5e-08 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107902 [exp] 41 / 0.0001 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028223 pacid=23166492 polypeptide=Lus10028223 locus=Lus10028223.g ID=Lus10028223.BGIv1.0 annot-version=v1.0 ATGGGTACTGGGTGGAGAAGAGCCTTTTGTACTACTGTACCTAGAGATAAGCACCTTCCCAATCCCACTAGTCCTCCTCCTCCAACTACTTCAACCCCCA GGACGACTAAGAAGCTCTCTTTCTTCTCCTCCGGAACTAGCAGCAGTAGTAACCCTTCTACTCCTCGTCTCCGCCTCAGATCTCTTTCCAGTCCTTCTTT GCGCTCCCGCCCTACTACTACTAGTTCATCAGCACCTAATGTCAATACTGATGACACTACTCCTACCCTCCATTGCAAGACTACTCATAATACTCCCAGA GCAACAACCAAGACTCCTACTGCTACTCCCAAACCCAAACTCCCCTCCAATCCTTCTTCCCCTCGCTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGCT TTAAGTTCAGGGTACGTGCGTAA
AA sequence Show only first row Show all	>Lus10028223 pacid=23166492 polypeptide=Lus10028223 locus=Lus10028223.g ID=Lus10028223.BGIv1.0 annot-version=v1.0 MGTGWRRAFCTTVPRDKHLPNPTSPPPPTTSTPRTTKKLSFFSSGTSSSSNPSTPRLRLRSLSSPSLRSRPTTTSSSAPNVNTDDTTPTLHCKTTHNTPR ATTKTPTATPKPKLPSNPSSPRSPLKLSLFKNSFKFRVRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	0	1
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	1.0	0.9587
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	1.4	0.9411
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	1.7	0.9193
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	4.0	0.9125
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	10.2	0.9002
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	10.5	0.8949
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	10.8	0.8744
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	14.4	0.8899
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	14.7	0.8761
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011953 [exp]	15.3	0.8657

Compare expression of checked genes

Lus10028223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.