Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49665 255 / 3e-79 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 161 / 1e-44 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 158 / 2e-43 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G65683 157 / 3e-43 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 144 / 2e-38 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 136 / 8e-36 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 134 / 6e-35 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 127 / 1e-32 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042930 [exp] 426 / 6e-146 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 191 / 7e-55 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 149 / 2e-40 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 149 / 3e-40 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039634 [exp] 139 / 1e-37 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 139 / 2e-36 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 138 / 4e-36 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 137 / 4e-36 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039635 [exp] 56 / 1e-08 AT4G37890 290 / 1e-92 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107902 [exp] 322 / 2e-104 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 157 / 4e-43 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 147 / 2e-39 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 139 / 8e-37 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 130 / 1e-33 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 128 / 5e-33 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 91 / 3e-20 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 91 / 3e-20 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.018G062500 [exp] 44 / 0.0001 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.003G068000 [exp] 42 / 0.0004 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Lus10028224 pacid=23166560 polypeptide=Lus10028224 locus=Lus10028224.g ID=Lus10028224.BGIv1.0 annot-version=v1.0 ATGGTTGATTCTTCTCCCAGAGCGGTCAAGTCGGTGATCTCCTCTAACTCTAAGGTAGAACCGTCTTCCCCCAAATGTTCCGATTTCAGATCTTACGATG ACGACGAGCCCCTTCTGTCTCCCCCCGCCGGCGGTAGGTTTATCCCGATTCCCGAGGCTGCTAATGAGAATGTCGACGAGGAGGAGGAAATACAAGTCGA TGTTGAGGAGTTTCAAGGATTCTTCGTTAATCCCACTCATTCGATAAAATCCGAGGAGACGCCGTTGATCGGCAGGGACTCCAGAACTGTTCAGGTTAGT TTGTTACCTGATTCCGCCGTCGTATCTGTCGGCCACGGCTCGGAAACTTATGCGGTTGCATTACGGGTGAAAGCTCCTCCGCCTTTGCAACAATCGGTAT CGAATAGAGGTAACGCTTCTGCGACGAGTCGAGCTCCGATCGATTTAGTTGCAGTACTGGATGTCAGTGGAAGCATGGCCGGTCCTAAGCTATTGATGCT GAAACGAGCTATGCGTTTGGTGATCTCTTCATTGGGATCGGCTGACCGCCTCTCAATCGTGGTTTTCTCATCCGTTCCGAAGCGAATGTTGCCGTTGATG AGGATGACAGCTCACGGTCAGCGTGCAGCTCGGCTCATCGTTGACCGGCTGGTTTGCGGTCAAGGGAGCAGTGTGGCTGAAGCTCTAAGGAAAGCGGCTA AGGTGCTGGAAGATAGGAGGGAGAAAAATCCGGTGGCGACGATCATGCTCTTATCCGACGGTCAGGATGACCGCGTCCAGAGCAATCAGCGTTACGAGAA GAGCCATATGTCCTCCACATCCACCAGGTTTGCGCACATCGAGATCCCTGTTCATGCTTTCGGTTTCGGCAAGAGCGGCGGGTGGGGCGGACAGGCCGCG CCCGGAGGGGAGGGCCGGCCGGGGGGGGCGTCGGTATGGCGTTGGAGGATTGCTTAG
AA sequence Show only first row Show all	>Lus10028224 pacid=23166560 polypeptide=Lus10028224 locus=Lus10028224.g ID=Lus10028224.BGIv1.0 annot-version=v1.0 MVDSSPRAVKSVISSNSKVEPSSPKCSDFRSYDDDEPLLSPPAGGRFIPIPEAANENVDEEEEIQVDVEEFQGFFVNPTHSIKSEETPLIGRDSRTVQVS LLPDSAVVSVGHGSETYAVALRVKAPPPLQQSVSNRGNASATSRAPIDLVAVLDVSGSMAGPKLLMLKRAMRLVISSLGSADRLSIVVFSSVPKRMLPLM RMTAHGQRAARLIVDRLVCGQGSSVAEALRKAAKVLEDRREKNPVATIMLLSDGQDDRVQSNQRYEKSHMSSTSTRFAHIEIPVHAFGFGKSGGWGGQAA PGGEGRPGGASVWRWRIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	0	1
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	1.0	0.9587
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	2.8	0.9204
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	3.7	0.9140
AT5G10010			unknown protein		Lus10005778 [exp]	3.9	0.9170
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	4.0	0.9134
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	4.9	0.9173
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	7.3	0.9147
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	9.6	0.8959
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	10.4	0.8930
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	10.5	0.9064

Compare expression of checked genes

Lus10028224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.