Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49665 64 / 4e-13 Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 54 / 1e-09 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT2G22680 50 / 2e-08 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 48 / 9e-08 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042930 [exp] 94 / 1e-23 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039635 [exp] 57 / 6e-11 AT4G37890 290 / 1e-92 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Lus10003485 [exp] 53 / 3e-09 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107902 [exp] 78 / 4e-18 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028225 pacid=23166554 polypeptide=Lus10028225 locus=Lus10028225.g ID=Lus10028225.BGIv1.0 annot-version=v1.0 ATGCAGTCGGAGTACGAAGGGGCGGAGGAGTACCGGAAGGTGGTGGAGGTGGAGCTAGCAGAGCTACACTGGAGGAAACAACAGGAGATAGAGGCGGGGG CGATGATGATGCAACAGCAACGGAGGAGAGGAGGAGAGAGGGAAGCGGCGGTGGTGATGACTGACGAGAACGGGGAGCCGTTAACGCCGACATCGGCTTG GAGAGCGGCTGAGAAGCTGGCTAAGATGGCTATGATGAAGAAGTCGATGAATAGAGTGAGCGATTTACACGGGTTTGAAAACGCGAGATTCTGA
AA sequence Show only first row Show all	>Lus10028225 pacid=23166554 polypeptide=Lus10028225 locus=Lus10028225.g ID=Lus10028225.BGIv1.0 annot-version=v1.0 MQSEYEGAEEYRKVVEVELAELHWRKQQEIEAGAMMMQQQRRRGGEREAAVVMTDENGEPLTPTSAWRAAEKLAKMAMMKKSMNRVSDLHGFENARF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	4.1	0.9260
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	5.1	0.9196
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	6.7	0.8989
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	8.5	0.9027
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	8.7	0.9112
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	8.9	0.8970
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	9.0	0.9142
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	9.2	0.9098
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	10.9	0.9044
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	12.4	0.8756

Compare expression of checked genes

Lus10028225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.