Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58290 750 / 0 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) AT1G09940 713 / 0 HEMA2 Glutamyl-tRNA reductase family protein (.1) AT2G31250 574 / 0 HEMA3 Glutamyl-tRNA reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042932 [exp] 544 / 0 AT1G09940 433 / 4e-150 Glutamyl-tRNA reductase family protein (.1) Lus10042931 [exp] 424 / 6e-148 AT1G58290 337 / 2e-114 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107800 [exp] 811 / 0 AT1G58290 756 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.009G080600 [exp] 648 / 0 AT1G58290 672 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.001G286400 [exp] 643 / 0 AT1G58290 666 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05201 [flax] [poplar] GlutR_N Glutamyl-tRNAGlu reductase, N-terminal domain PF00745 [flax] [poplar] GlutR_dimer Glutamyl-tRNAGlu reductase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028226 pacid=23166407 polypeptide=Lus10028226 locus=Lus10028226.g ID=Lus10028226.BGIv1.0 annot-version=v1.0 ATGGCTGTTTCGAGCGGTGTCGCTACTACCTTGGCAGCAGCCAAGATGGAGGCTTTCTTGTTGAATACTTCATTCCCGTCGGCTTCCTCATCTGGGTCGC CCTCGTCTCTCCGGGCTTATCTGGCTACCTCTCAACTGAAGATCAACTGCTCCAGGAGCAGAAAGAGCAGTTCAATGCTGAGAGGAGGGCTCAGATTTGA TGTCACCGCTTCGTCATCTGTAGAAGATGGTGTCGTTGAGACTGCCGACACTCGGATTGGCCTCGGCAACGTTTCTAGCCAGTCTGCCCTCGAGCAGCTG AAGACATCCGCCGCTGATAGGTATACAAAGGAAAGGGCAAGCATCGTGGCTATAGGACTCAGTGTGCATACTGCACCAGTTGAAATGCGTGAAAAGCTTG CTATTCCAGAAGCTGAATGGCCTAGAGCCATTGCTGAACTTTGTAGCCTCAACCATATTGAAGAAGCTGCAGTGCTCAGTACTTGCAACCGTATGGAGAT ATATGTTGTAGCCCTTTCTCAGCATCGCGGAGTTAAAGAGGTCACCGACTGGATGTCCAAGACAAGCGGCATCCCTGCATCAGAAATCTGCGAGCACCGA TTCCTTCTCTACAACAACGATGCAACGCGTCACTTGTTCGAAGTATCTGCTGGTCTTGACTCGCTGGTTCTTGGAGAGGGTCAGATTCTCGCCCAGGTTA AGCAAGTTGTGAATGTCGGCCAAGGTGTTGTTGGGTTTGGAAGGAACATAAGCGGGTTGTTCAAACACGCGATAACGGTTGGGAAACGTGTCAGGTCGGA GACGAGCATCGCTGCTGGCGCTGTTTCTGTGAGCTCTGCTGCGGTCGAACTTGCACTCATGAAAATCCCCAAAGCCGCACACTCCACTGCCCGAATGTTG GTTATCGGTGCAGGCAAGATGGGGAAGCTTGTGATCAAGCACTTAGCGGCGAAAGGCTGCACGAAGATGGTGGTCGTAAATAGATCGGAGAAAAGAGTGG CAGCCATACGCGAAGAGATCAAGGATGTTGAGATCCTTTACAGACCGCTCGATGAGATGCTCGCATGTGCAGCTGAATCCGATGTGGTATTCACCAGCAC TGCATCGGATGTCCCGCTGTTCCGAAAAGAACATGTCGAGCAACTCCCAGCTGTTAACTCGGAAGTTGGAGGCTCGAGATTATTTGTCGACATTTCTGTT CCGAGGAATGTTGGCTCATGTGTTAACGACCTTGAAAACGTTCGTGTCTACAACGTGGACGACCTTAAGGAGGTTGTGGCTGCTAACAAAGAGGATCGCC TCAGGAAAGCAATGGAAGCTCTAGATATCATCACCGAGGAAACGAAGCAGTTTGAAGCTTGGAGGGATTCGCTCGAGACCGTACCAACCATCAAGAAACT GAGAGCGTATGCCGAGAGGATCAGGCTAGCGGAGCTGGATAAATGTCTGTCGAAAATGGGTGGTGAAGAGATCCCGAAGAAGACGAGGAGAGCTGTAGAT GATCTGAGTCGCGGAATTGTGAACAAGCTGTTACACGGACCGATGCAGCACTTGAGATGCGACGGGAGTAACAGCCGTACTCTTACTGAGACACTTGAGA ATATGCATGCTCTTAACAGGATGTTCAGCTTGGAAACAGAAATAGCTATCCTGGAACAAAAGATTCGAGCCAAAACCAGCCAGAAGTAA
AA sequence Show only first row Show all	>Lus10028226 pacid=23166407 polypeptide=Lus10028226 locus=Lus10028226.g ID=Lus10028226.BGIv1.0 annot-version=v1.0 MAVSSGVATTLAAAKMEAFLLNTSFPSASSSGSPSSLRAYLATSQLKINCSRSRKSSSMLRGGLRFDVTASSSVEDGVVETADTRIGLGNVSSQSALEQL KTSAADRYTKERASIVAIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTDWMSKTSGIPASEICEHR FLLYNNDATRHLFEVSAGLDSLVLGEGQILAQVKQVVNVGQGVVGFGRNISGLFKHAITVGKRVRSETSIAAGAVSVSSAAVELALMKIPKAAHSTARML VIGAGKMGKLVIKHLAAKGCTKMVVVNRSEKRVAAIREEIKDVEILYRPLDEMLACAAESDVVFTSTASDVPLFRKEHVEQLPAVNSEVGGSRLFVDISV PRNVGSCVNDLENVRVYNVDDLKEVVAANKEDRLRKAMEALDIITEETKQFEAWRDSLETVPTIKKLRAYAERIRLAELDKCLSKMGGEEIPKKTRRAVD DLSRGIVNKLLHGPMQHLRCDGSNSRTLTETLENMHALNRMFSLETEIAILEQKIRAKTSQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10028226 [exp]	0	1
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	1.4	0.9072
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	4.1	0.9085
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	4.2	0.9019
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	4.2	0.8815
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10029142 [exp]	7.3	0.8875
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10031342 [exp]	9.2	0.9014
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	15.9	0.8788
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	18.3	0.9003
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	23.0	0.8571
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10042219 [exp]	26.3	0.8615

Compare expression of checked genes

Lus10028226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.