Plant FIBer expression Database

Lus10028227 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37870 544 / 0 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1)
AT5G65690 542 / 0 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019242
[exp]
536 / 0 AT4G37870 1120 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10011582
[exp]
514 / 1e-175 AT4G37870 1051 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10042933
[exp]
489 / 4e-169 AT4G37870 655 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Lus10042934
[exp]
294 / 4e-96 AT4G37870 409 / 8e-141 phosphoenolpyruvate carboxykinase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G107700
[exp]
583 / 0 AT4G37870 1039 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Potri.007G011200
[exp]
538 / 0 AT4G37870 1058 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0374 PEP-carboxyk PF01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence
>Lus10028227 pacid=23166401 polypeptide=Lus10028227 locus=Lus10028227.g ID=Lus10028227.BGIv1.0 annot-version=v1.0
ATGGCTTCTGGCGGCGGGGCTAATGACAACAACGGCCAGTTCAGCTTCTCCTCGGGGAGCCACCGTGCTGCTGCCCCTGTCGTAACCAAGGGCCGGAACG
GTCTGCCGAAGATCCAGACGCATGATGACAGCAAGAAGTTCAGCAACGCCGGAGCCAAAGGATCGCCCAGCGCAGCCAACGCGGAGGATCTGTGCTACGA
CGACAGCGCTACACCGATCAAGGCTCAGACGCTGGATGAGCTCCATTCCCTTCAGAAGAAGAGATCCACCCCTTCGACTCCCATGACCGCTCCTGCGGCG
GGGGGGGACGCGACACAANNNNNNNNNNNNNNGCGGCCGTTACTGCGTCGCCGGCATCGGGGAGGAAGAGAGGCAGCGGAAGCAGCTGCAGTCGATCAGT
GCGTCTCTGGCGTCGCTGACGAGGGAGACTGGGCCCAAGGTGGTGAAAGGAGATCCCGCGAGGAGGGGCCCATCAGCGGCGAAGATGAGCTGTACGAGCA
AGCGATAAAGTATGAGAAAGGGTCGTTCATAACGGCGACGGGGGCACTGGCGACGCTTTCAGGGGCTAAGACTGGAAGATCGCCAAGGGATAAGCGTGTT
GTTAGGGACGATGCCACCGAGGATCATCTTTGGTGGGGAAAGGGATCGCCAAACATCGAGATGGATGAGCATACGTTCTTGGTGAACAGGGAGCGAGCTG
TGGATTACTTGAACTCATTGGACAAGGTGTTTGTGAACGATCAATTTCTGAACTGGGATCCAGAACACAGGATCAAAGTCCGTATTGTTTCCGCCAGGGC
ATATCACTCCTTGTTCATGCACAATATGTGCATTAGACCGACGCAGGAGGAGCTGGAGAACTTTGGGACACCAGACTTCACAATATACAATGCAGGGCAG
TTCCCCTGTAACCGTTACACTCACTACATGACCTCTTCAACTAGCATTGACATGAACCTCGGGAGGAGGGAAATGGTGATTTTGGGAACCCAGTATGCTG
GTGAGATGAAGAAAGGACTCTTCAGTGTCATGCACTATCTCATGCCTTTGCGTGGCATCCTGTCTCTCCACTCTGGTTCCAACATGGGAAAATCTGGAGA
CGTTGCTCTCTTCTTTGGCTTATCAGGCACTGGGAAGACTACACTGTCGACTGATCATAACAGGTATTTGATTGGAGACGATGAGCACTGTTGGAGCGAC
AACGGCGTCTCAAATATCGAAGGCGGTTGCTATGCTAAATGCATTGATCTATCTGCCGAGAAGGAACCTGATATCTTCAATGCCATCAAATTCGGGACTG
TGTTGGAGAATGTCGTGTTCGATGAGCATTCAAGAGAAGTGGACTACACAGACAAATCCGTGACAGAGGATGGCATCAAGGAACCTCAGGCAACCTTTTC
AGCCTGCTTTGGTGCTGCCTTCATAATGATGCATCCCACTAGGTATGCAGCAATGCTGGCTGAGAAGATGGAGAAGCATGGAGCTACCGGATGGCTAGTT
AACACCGGCTGGTCTGGCGGAAGCTATGGATCTGGGAGCCGTATGAAGCTGGCTTATACTCGAAAGATCATCAACGCAATACACTCCGGGGAACTTCTCA
ACGCGAAGTACGCTACGACGGATATATTCGGGCTTGAAATCCCATCAGAGATTGAGGGGGTTCCTTCAGAAATCCTTGATCCTATAAACACTTGGTCGGA
CAAGAAGGCGTACAAGGATACTCTGCTGAAATTGGGAGGTCTGTTCAGGAAGAACTTTGAAGTGTTTGCCAATCACAAGATAGGGAAGGACGGGAAACTC
ACTGATGAGATTCTTGCTGCTGGTCCTAATTTCTAA
AA sequence
>Lus10028227 pacid=23166401 polypeptide=Lus10028227 locus=Lus10028227.g ID=Lus10028227.BGIv1.0 annot-version=v1.0
MASGGGANDNNGQFSFSSGSHRAAAPVVTKGRNGLPKIQTHDDSKKFSNAGAKGSPSAANAEDLCYDDSATPIKAQTLDELHSLQKKRSTPSTPMTAPAA
GGDATQXXXXXRPLLRRRHRGGREAAEAAAVDQCVSGVADEGDWAQGGERRSREEGPISGEDELYEQAIKYEKGSFITATGALATLSGAKTGRSPRDKRV
VRDDATEDHLWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMCIRPTQEELENFGTPDFTIYNAGQ
FPCNRYTHYMTSSTSIDMNLGRREMVILGTQYAGEMKKGLFSVMHYLMPLRGILSLHSGSNMGKSGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSD
NGVSNIEGGCYAKCIDLSAEKEPDIFNAIKFGTVLENVVFDEHSREVDYTDKSVTEDGIKEPQATFSACFGAAFIMMHPTRYAAMLAEKMEKHGATGWLV
NTGWSGGSYGSGSRMKLAYTRKIINAIHSGELLNAKYATTDIFGLEIPSEIEGVPSEILDPINTWSDKKAYKDTLLKLGGLFRKNFEVFANHKIGKDGKL
TDEILAAGPNF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10028227
[exp]
0 1
AT2G05910 Protein of unknown function (D... Lus10033432
[exp]
1.0 0.9799
AT1G08630 THA1 threonine aldolase 1 (.1.2.3.4... Lus10014658
[exp]
1.7 0.9786
AT4G30420 nodulin MtN21 /EamA-like trans... Lus10019970
[exp]
2.4 0.9740
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Lus10005697
[exp]
2.6 0.9737
AT3G14260 Protein of unknown function (D... Lus10001484
[exp]
3.2 0.9774
AT3G06850 DIN3, LTA1, BCE... DARK INDUCIBLE 3, 2-oxoacid de... Lus10006498
[exp]
4.7 0.9786
AT2G23790 Protein of unknown function (D... Lus10022496
[exp]
6.0 0.9663
AT1G16350 Aldolase-type TIM barrel famil... Lus10036443
[exp]
6.3 0.9674
AT5G64530 NAC ANAC104, XND1 Arabidopsis NAC domain contain... Lus10010747
[exp]
6.9 0.9511
AT2G14095 unknown protein Lus10025500
[exp]
7.2 0.9496

Lus10028227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.