Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27590 268 / 6e-90 unknown protein AT1G27570 202 / 4e-60 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT5G01400 129 / 2e-33 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007229 [exp] 434 / 6e-156 AT1G27590 281 / 1e-95 unknown protein Lus10005032 [exp] 134 / 3e-35 AT5G01400 1159 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107400 [exp] 324 / 6e-102 AT1G27595 762 / 0.0 unknown protein Potri.016G116600 [exp] 145 / 7e-39 AT5G01400 1348 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11935 [flax] [poplar] DUF3453 Domain of unknown function (DUF3453)
Representative CDS sequence Show only first row Show all	>Lus10028228 pacid=23166485 polypeptide=Lus10028228 locus=Lus10028228.g ID=Lus10028228.BGIv1.0 annot-version=v1.0 ATGGCTTCACGAGACCAGGCGCTGTCTCTCCTCGGCGCGGCTAGGGCGCATGCCGATGTCGCCGTCAAGCTTTCTTCCCTTAGACAGGCCAGACACATTC TCTTGTCCATCCAGCCCTCATTGGCTGCCGAGCTCTTCCCTTACTTGGTCGACCTCCAGTATTCATCTGACAACCTCGTCAGGAAGATGCTTCTTGAGAT AATTGAAGAACTTGGTATGAAAGCTATGGAGCATTTTCACCTACTAGTGCCGGTTTTGTTGGTGTTTCTAAGAGATACAGATCCTATAATTGCTAGGGAG GCTGTTGCCAGTGGCATACATTTTTTCTGTGCCGTTCTGGAGGAAATGGCATTTCAGTTTCACCAACGTGGTCAAGTAGAGCGCTGGCTTGAAGAGCTCT GGATATGGATGCTTAAATTTAAGGATTCTGTTTTCTCTATTTTGTTTGAGCCTGGCTCCATTGGACCGAAGTTGCTGGCATTGAAATTTCTGGAAACATA CATTTTACTTTTTACTCCAGACATGAATGATTCAGACAAAAGTGCCATGGGAGGAAGTAGACGATTATTTAATATCTCATGGCTGCGAGGTTACCATCCT GTGTTGGATCCTGTTTCTCTCATTTCTGATGCAAATAGGACATTAGGTATTCTATTGGATTTTCTAGGGTCACCTGGCAGCCTTCGTGGTTCATTGGCAA CTGCTGTTGTCAATTGTCCAGCTAGTGGGTGTTTACAGAGTAGACTCTATTCACAATTTTGGATACTTTGGAGCACCAGTGGCCAGTTATTGGGATGGTT AAATGGTCAATCCCAGGTGCTGAGCGAGACTGGGTGGTCAAGCAAAGCAGTATCTTCATAA
AA sequence Show only first row Show all	>Lus10028228 pacid=23166485 polypeptide=Lus10028228 locus=Lus10028228.g ID=Lus10028228.BGIv1.0 annot-version=v1.0 MASRDQALSLLGAARAHADVAVKLSSLRQARHILLSIQPSLAAELFPYLVDLQYSSDNLVRKMLLEIIEELGMKAMEHFHLLVPVLLVFLRDTDPIIARE AVASGIHFFCAVLEEMAFQFHQRGQVERWLEELWIWMLKFKDSVFSILFEPGSIGPKLLALKFLETYILLFTPDMNDSDKSAMGGSRRLFNISWLRGYHP VLDPVSLISDANRTLGILLDFLGSPGSLRGSLATAVVNCPASGCLQSRLYSQFWILWSTSGQLLGWLNGQSQVLSETGWSSKAVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27590			unknown protein		Lus10028228 [exp]	0	1
AT1G27590			unknown protein		Lus10007229 [exp]	1.0	0.9510
AT4G03090			sequence-specific DNA binding;...		Lus10024745 [exp]	4.0	0.9368
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	7.2	0.9355
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	9.8	0.9305
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	11.8	0.9275
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	13.3	0.9362
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	15.0	0.9214
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	15.2	0.9265
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	15.7	0.9336
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	16.3	0.9339

Compare expression of checked genes

Lus10028228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.