Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27595 476 / 3e-154 unknown protein AT5G01400 326 / 4e-95 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007230 [exp] 706 / 0 AT1G27595 340 / 7e-105 unknown protein Lus10005032 [exp] 324 / 1e-94 AT5G01400 1159 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107400 [exp] 828 / 0 AT1G27595 762 / 0.0 unknown protein Potri.016G116600 [exp] 369 / 4e-111 AT5G01400 1348 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12295 [flax] [poplar] Symplekin_C Symplekin tight junction protein C terminal
Representative CDS sequence Show only first row Show all	>Lus10028229 pacid=23166535 polypeptide=Lus10028229 locus=Lus10028229.g ID=Lus10028229.BGIv1.0 annot-version=v1.0 ATGGATCAATCAAGGAAAAGAAATCTTCCCCTGGATACTGACGAGCCAGTTAATGGTCATGAGGTGTCTCTTAAACGAAGTCGTTATGGTCCTAATGACT CTTCAAGCATGACAACTCACACAAATCATTCTGAGAAGGGTTCAGTGTTTGGCAATGGCACTCCGTCTAACGCTCCTGCAGTAGATGGTGATTTGACTCC CGCAGAGCAGATGATTGCCATGATCGGTGCATTACTTGCGGAAGGAGAAAGAGGGGCTGAATCACTTGAAATTCTTATTTCAAATATTCATCCTGATTTA CTTGCTGACATTGTCATCACTAATATGAAGCATTTGCCTAAGACCCTGCTATCTTTGCCAAAGCTTGGTAAGTTGCCAGCCTCTCACCAACTTAGCTCTG AGACCAGCGCTGTACAGGTTATTGCACCACCCATTGTGAACCAGTCTGCTTCTCCAGCCCTTGTTTCTCAGGCTGCTGCATCTGGTGTACCTACCAATAT CTTGTCTCCGCCTGATGCATCAACTACCAATAGTTTTCCCGCAGATTCAAAACGAGATCCGAGAAGGGATCCTCGCCGCCTGGATCCACGTCGTACAATG CCACCTGTTGGTGTATCATTGACATCTGATGTAGATGATACTGGTGTTATGGAACCTGAATTTGACCGGTCTACTTTTAGTAAGCCTTTGTCATTCTCTG TGTCAGGACCTGTTGAGAATATACCAACAGCTTTGTCTTCGAACAATAATGTCGAGGAAAATATAGAGTTGACTTCTGAAAGTGATCAAGTCAGTGTGAA AGATGAGGACTTTGGTACAGAAGAAATCGTTCCTACCTCAGAAGCTATTCCTTCTGCAGAGTGTTCACTTTCTCCTCCAGATCTAGTTGTCCAGGACCGC GATGCATCATATTTTGATGTGCCATATGATGCTGAAACATCTTTCCTAGAATCTGATCAACATTCTCCTGATGTATCAAAAGAATTTGTGGCTGAGGATA CTCTTTCAGATCTTCCCCAGCTTCCAGTGTTTGTTGAACTAAATGAGGTGCAGCAAAGAAATGAAAGAAAAGCGGCAGTTGAGCGGATTATTGAATCCTA TAAGACCCTTCCCGACACTGATTGCAGCAGCCATACACGCATGGCTTTACTTGCTCGGTTAGTTGCTCAGTCTACATCTTTGTTGGATGCTTTCCCAACT TCTGACAAGTCTTTTAGTCGACTTCTAGGCGAAGTTCCACTTTTATCTGAGTCAGCATTGAAATTGCTGGATGATCTGTGCTTTTGTAATGCTTTTGATT ATCATGGGAAGGAGGCCCGTGATGTTGAACGTGTCACTCAAGGCCTTGGTGCTGTTTGGAGTTTGATTATAGGGCGACCAAAGGATCGGAAAGTTTGCTT AGATATTGCTTTGAAGTGTGCTGTTCATTCACAAGATGATGTTCGAGCAAAGGCTATTCGGCTGGTGGCAAACAAACTTTATCAGCTAAGCTACATCTCA GAAAATATTGAGCAATTTGCAACAAATATGCTGCTATCTGCTGTAGATCAGCAGGCTTCAGATGTAGGGCTTTCTCAGTCAATATCCACTGAGCAAAGAG AAGGCGAGGTTGGGACCCAGGAAACCTCAGTTAGTGGTTCTCATGTTCAAAGCGTTTCAACCTTGTCTCTCCCGGAAGCTCAGCGTCTTATTTCTTTGTT CTTCGCTTTGTGTACTAAGAAACCTAGTCTCCTTCAACTTGTCTTTGATGTTTATGGCCAAGCACCAAAAACAGTAAAACAGGCTGTTCACCGTCATATG CCTATTCTTATTAGGACTCTAGGATCATCTTATTCCGACCTTCTACATATAATAGCTGATCCACCAGAAGGGTGTGAGAATCTTTTGATGCTGGTGGTCC AAATATTAACCCAGGACACAACACCTTCGACTGATTTGATAGCTACCGTCAAACATCTATATGAAACTAAGCTAAAGGACGCTACAATACTAATTCCGAT ATTGTCATCCCTTTCGAAGAGCGAGGTGTTACCTATATTCCCACGACTTGTTGGGCTTCCGATAGAGAAGTTCCAGATGGCACTAGCTCATATTTTACAG ATAACAGAAGCATGCACAGCATGTTTCGAACAGCGTACAGTTTTTAGCCAGCAAGTCTTGGCCAAGGCACTGAATCAAATGGTTGACCAGACACCTTTGC CCTTGCTCTTCATGCGAACGGTGATTCAGGCAATTGATGCATTTCCTCCCCTGTTACCGCCTCCACAACTTGAAAGCGCGCTGAACAAGTATGTCAATCT TAGAAGTCCCTTGGCTGCTTACGCCACTCAGCCTAGCGTAAAGGATTCGCTACCTAGGTACATCTTTCTCGACTTCTGGAATCAATTTTTGAACAAAGCT GACTTGGATGATAATTTCGTAGCCTTTTTGCCTTTCCTTGTGCAGATCGATATTAGCAGTACTGGGTCTTTCGGGGGAAATGCATAA
AA sequence Show only first row Show all	>Lus10028229 pacid=23166535 polypeptide=Lus10028229 locus=Lus10028229.g ID=Lus10028229.BGIv1.0 annot-version=v1.0 MDQSRKRNLPLDTDEPVNGHEVSLKRSRYGPNDSSSMTTHTNHSEKGSVFGNGTPSNAPAVDGDLTPAEQMIAMIGALLAEGERGAESLEILISNIHPDL LADIVITNMKHLPKTLLSLPKLGKLPASHQLSSETSAVQVIAPPIVNQSASPALVSQAAASGVPTNILSPPDASTTNSFPADSKRDPRRDPRRLDPRRTM PPVGVSLTSDVDDTGVMEPEFDRSTFSKPLSFSVSGPVENIPTALSSNNNVEENIELTSESDQVSVKDEDFGTEEIVPTSEAIPSAECSLSPPDLVVQDR DASYFDVPYDAETSFLESDQHSPDVSKEFVAEDTLSDLPQLPVFVELNEVQQRNERKAAVERIIESYKTLPDTDCSSHTRMALLARLVAQSTSLLDAFPT SDKSFSRLLGEVPLLSESALKLLDDLCFCNAFDYHGKEARDVERVTQGLGAVWSLIIGRPKDRKVCLDIALKCAVHSQDDVRAKAIRLVANKLYQLSYIS ENIEQFATNMLLSAVDQQASDVGLSQSISTEQREGEVGTQETSVSGSHVQSVSTLSLPEAQRLISLFFALCTKKPSLLQLVFDVYGQAPKTVKQAVHRHM PILIRTLGSSYSDLLHIIADPPEGCENLLMLVVQILTQDTTPSTDLIATVKHLYETKLKDATILIPILSSLSKSEVLPIFPRLVGLPIEKFQMALAHILQ ITEACTACFEQRTVFSQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPPLLPPPQLESALNKYVNLRSPLAAYATQPSVKDSLPRYIFLDFWNQFLNKA DLDDNFVAFLPFLVQIDISSTGSFGGNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27595			unknown protein		Lus10028229 [exp]	0	1
AT1G27595			unknown protein		Lus10007230 [exp]	1.0	0.9720
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10023804 [exp]	3.0	0.9300
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	3.2	0.9653
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	3.9	0.9396
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	4.0	0.9301
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	4.9	0.9252
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	5.8	0.9202
AT4G24610			unknown protein		Lus10015962 [exp]	6.9	0.9206
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	7.7	0.9340
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	8.1	0.9254

Compare expression of checked genes

Lus10028229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.