Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58340 516 / 2e-179 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G29140 418 / 4e-141 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 410 / 3e-138 MATE efflux family protein (.1) AT4G23030 407 / 3e-137 MATE efflux family protein (.1) AT5G52050 370 / 7e-123 MATE efflux family protein (.1) AT2G38510 353 / 2e-116 MATE efflux family protein (.1) AT1G71870 341 / 2e-111 MATE efflux family protein (.1) AT5G49130 328 / 1e-106 MATE efflux family protein (.1) AT4G22790 215 / 2e-63 MATE efflux family protein (.1) AT1G71140 208 / 6e-61 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007231 [exp] 810 / 0 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 451 / 2e-154 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 438 / 1e-148 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 412 / 9e-139 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10025237 [exp] 330 / 2e-106 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 328 / 2e-106 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 261 / 9e-82 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 217 / 9e-64 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 209 / 5e-61 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107200 [exp] 572 / 0 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.012G133500 [exp] 450 / 3e-153 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 446 / 6e-152 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 444 / 2e-151 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 418 / 3e-141 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 360 / 8e-119 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 356 / 8e-117 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 353 / 3e-116 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 352 / 8e-116 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.001G115400 [exp] 245 / 1e-74 AT4G22790 487 / 3e-169 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10028230 pacid=23166537 polypeptide=Lus10028230 locus=Lus10028230.g ID=Lus10028230.BGIv1.0 annot-version=v1.0 ATGTGTAATCCTAAATCATCCTCTCCACCTTCATTGATCCATGCCTCACCCAACCAAACCCATCTTCCCAAACCGAAATCTAATTACGGCTATGACAAAC AACAATATGAGCATGATCAACAGAAACTCCATGAATGGCCATCTCCTTCCGAGGCCATGGAGGAAATAAAAGCGTTAGGGAGAATCTCAGGACCAACGGC GATAACCGGACTGATCCTCTACTCAAGAGCCATGATCTCCATGCTCTTCCTCGGCTACCTCGGCGAGATGGAACTCGCCGGCGGCTCACTATCCATCGGC TTCGCCAACATAACCGGCTACTCCGTAATATCCGGACTCGCCATGGGTATGGAGCCCATCTGCGGCCAAGCCTACGGAGCCAAGCAGATGAAGCTCCTTG GTCTAACCCTCCAACGAACGGTCCTCCTCCTCCTCACCGCCTCCCTCCCCATCTCCATCGCCTGGCTCAACATCGAGTCCATCCTCCTCCGTTGCGGCCA GGACAAATCGATCTCCACTGCCGCCGCAACCTTCACCTTATTTTCCATCCCTGACCTTTTCCTCCTCTCCGTCTTGCACCCTCTCCGCATCTACCTCCGT ACCCAGGGCGTCACTTTCCCTCTAGCGGCCTGCTCGGCCGCCTCCGTCCTCCTCCACCTCCCTCTCAACTACCTCTTCGTCTTCCACTTCAAACTCGGAA TCTCCGGCGTGGCGGCGGCGGCGGTTATCACAAACCTCAACCTCATCGTTTTATTAATCTCCTTTGTTTACGTATCGGGAGTTTATAAGGAGTCATGGGT TACACCAGGGGTTAATTGTTTAAAAGGGTGGGGACCACTATTGCAACTTGCGGTCCCCACGTGCGTGTCTGTCTGTTTGGAATGGTGGTGGTATGAACTC ATGATCATCCTTTGCGGCTTGCTCCCCAACCCTAAATCCACCGTGGCATCCATGGGCATCCTCATCCAGACGACGTCGTTGGTTTACGTCTTCCCTTCCT CCCTCGGACTCGGCGTCTCGACCCGGGTTTCAGCTGGGGTGTGTAACGAGCTGGGGCCTAACCGACCCGGTCGTGCGCGGTTTTCCACTATCGTGTCCAT GGTTGTTGCGGCGGTGTTGGGTGTGGCCGCGATGGGTTTCGCCACGGGGATGAGATCACGGTGGGGCCGGTTGTTCACCTCGGATTCTGAGATTCTGAAG CTGACCTCGCTCGCACTGCCCATAGTTGGGCTGTGTGAGCTGGGTAACTGCCCGCAGACCACAGGGTGCGGTGTGTTGAGGGGGAGCGCTCGGCCTACAG TCGGGGCGAATATTAATTTGGGGTCGTTTTTCGTGTTATCTGGTGGGAATGCCGGTCGCGGTTTGGCTCGGTTTCAGGGCGGGCTTTGGATTCGTCGGGT TATGGTTTGGGCTGCTTGCCGCGCAAGGATCGTGTGCGGTACTGATGCTCATAGTTCTGTGGCGGACGGATTGGATGGTCCAGTGGAAGGGAGGAAGATG AACAAGGAGGGAAATGTTACCAAGATGATTTTGTGCGTAAGGGATCATTACCAAGATAATAATATGCTAGAGACCGAACCATTGATTCTTTCCAACGGTG GCGGAGGCGGCGGCGAGAATGCGCAACGATAA
AA sequence Show only first row Show all	>Lus10028230 pacid=23166537 polypeptide=Lus10028230 locus=Lus10028230.g ID=Lus10028230.BGIv1.0 annot-version=v1.0 MCNPKSSSPPSLIHASPNQTHLPKPKSNYGYDKQQYEHDQQKLHEWPSPSEAMEEIKALGRISGPTAITGLILYSRAMISMLFLGYLGEMELAGGSLSIG FANITGYSVISGLAMGMEPICGQAYGAKQMKLLGLTLQRTVLLLLTASLPISIAWLNIESILLRCGQDKSISTAAATFTLFSIPDLFLLSVLHPLRIYLR TQGVTFPLAACSAASVLLHLPLNYLFVFHFKLGISGVAAAAVITNLNLIVLLISFVYVSGVYKESWVTPGVNCLKGWGPLLQLAVPTCVSVCLEWWWYEL MIILCGLLPNPKSTVASMGILIQTTSLVYVFPSSLGLGVSTRVSAGVCNELGPNRPGRARFSTIVSMVVAAVLGVAAMGFATGMRSRWGRLFTSDSEILK LTSLALPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLGSFFVLSGGNAGRGLARFQGGLWIRRVMVWAACRARIVCGTDAHSSVADGLDGPVEGRKM NKEGNVTKMILCVRDHYQDNNMLETEPLILSNGGGGGGENAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10028230 [exp]	0	1
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	2.8	0.7815
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10042922 [exp]	2.8	0.7773
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	6.2	0.7695
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	9.4	0.7047
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	9.6	0.7609
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10024328 [exp]	16.7	0.7265
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	20.0	0.7197
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	22.4	0.6888
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10020700 [exp]	30.2	0.7152
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	30.8	0.6036

Compare expression of checked genes

Lus10028230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.