Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58330 145 / 4e-43 ZW2 transcription factor-related (.1) AT1G09950 118 / 1e-32 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT4G18650 91 / 4e-22 transcription factor-related (.1) AT3G14880 89 / 1e-21 unknown protein AT4G18690 82 / 1e-18 unknown protein AT5G45830 77 / 1e-16 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18680 71 / 8e-15 unknown protein AT5G06950 62 / 4e-11 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 61 / 6e-11 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 60 / 2e-10 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042453 [exp] 107 / 1e-27 AT3G14880 145 / 3e-42 unknown protein Lus10027812 [exp] 102 / 4e-26 AT1G58330 116 / 1e-31 transcription factor-related (.1) Lus10025265 [exp] 97 / 6e-24 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10013711 [exp] 93 / 7e-23 AT3G14880 251 / 2e-84 unknown protein Lus10039193 [exp] 93 / 1e-22 AT3G14880 135 / 5e-39 unknown protein Lus10039196 [exp] 92 / 3e-22 AT3G14880 135 / 1e-38 unknown protein Lus10013746 [exp] 92 / 3e-22 AT3G14880 141 / 5e-41 unknown protein Lus10015276 [exp] 85 / 2e-19 AT4G18690 204 / 6e-65 unknown protein Lus10029229 [exp] 70 / 3e-14 AT4G18650 207 / 2e-67 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 115 / 6e-31 AT3G14880 159 / 6e-48 unknown protein Potri.004G058200 [exp] 87 / 2e-20 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.001G390100 [exp] 86 / 2e-20 AT3G14880 255 / 3e-86 unknown protein Potri.001G029800 [exp] 59 / 5e-10 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 58 / 9e-10 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 57 / 2e-09 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.002G090700 [exp] 54 / 1e-08 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.006G039000 [exp] 54 / 3e-08 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.005G170500 [exp] 52 / 1e-07 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.005G082000 [exp] 51 / 2e-07 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028231 pacid=23166457 polypeptide=Lus10028231 locus=Lus10028231.g ID=Lus10028231.BGIv1.0 annot-version=v1.0 ATGGCTAACACTATGGCGTCGTTCGAGTCCTTCTTCAATGACTGGCTCAATCGCCAACAACATCTGCTCGCGCAGCTTCTGGAAGCGGCAAAATCGGGAG AATCAGCAGGGGACCACCACCTCAACGCCCTAATTGACCAGTGCTTCTTCCAGCACAGGCTCTACTACCACGAGAAATCCAACGCCGCCACTCGCGGAGG AGCTTTGCTCTTCCTCTCCCCGCCGTGGCTCACATCCTTCGAGCGCAGCCTCCTCTGGCTCGGTGAATTCCGGCCGTCTACCGTGTTCCGCCTCCTCAAC AGCTCCGTCAATGACCTGACTGCGGATCAGTGCCAGAGGATCGAGCAGGTGAGGAGACAGACGAGAAGGGAGGAGATCGCGCTGACGGAGGTAATGGCGA CCATCCAGGAGAGCATGGCCTCGCCGGGGCTGTTGAGGCTTGCAAGGGCTACGGAGGCCCAGATCGACGGGGAGAGGAGGGAGGTTGACGAGGCTTTGGA GACGCTGAAGGCGGCAATGCTTGATGTGATGATGAGAGGCGACTCCCTACGCGGGGTGACGGTGGCCGGGGTTGTGGAGGCGCTGAGCCCCGTGCAGACG GTTGCGTTTTTGGTAGCGGCGGCGCAGTTTCAGTTAAGTGTGAGGAGGTGGGGCCAGGAGATGGATAGGAGAAGAATTCTTCACCAATAA
AA sequence Show only first row Show all	>Lus10028231 pacid=23166457 polypeptide=Lus10028231 locus=Lus10028231.g ID=Lus10028231.BGIv1.0 annot-version=v1.0 MANTMASFESFFNDWLNRQQHLLAQLLEAAKSGESAGDHHLNALIDQCFFQHRLYYHEKSNAATRGGALLFLSPPWLTSFERSLLWLGEFRPSTVFRLLN SSVNDLTADQCQRIEQVRRQTRREEIALTEVMATIQESMASPGLLRLARATEAQIDGERREVDEALETLKAAMLDVMMRGDSLRGVTVAGVVEALSPVQT VAFLVAAAQFQLSVRRWGQEMDRRRILHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58330		ZW2	transcription factor-related (...		Lus10028231 [exp]	0	1
AT5G11630			unknown protein		Lus10002035 [exp]	6.1	0.6825
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	39.9	0.6216
AT1G13570			F-box/RNI-like superfamily pro...		Lus10003016 [exp]	43.0	0.6356
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042099 [exp]	50.2	0.5655
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	55.0	0.5756
					Lus10041470 [exp]	61.4	0.5902
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	62.5	0.5972
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	64.2	0.6102
AT5G07610			F-box family protein (.1)		Lus10042989 [exp]	70.0	0.5508
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	77.2	0.6067

Compare expression of checked genes

Lus10028231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.