Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09970 1134 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G19700 903 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G49660 665 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 662 / 0 HSL1 HAESA-like 1 (.1) AT1G72180 620 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 609 / 0 HSL2 HAESA-like 2 (.1) AT4G28490 592 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 567 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G65700 566 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 555 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007232 [exp] 1755 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10020500 [exp] 727 / 0 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 660 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10007233 [exp] 643 / 0 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028234 [exp] 641 / 0 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018636 [exp] 639 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 635 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 634 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10019248 [exp] 565 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106800 [exp] 1292 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 1033 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G111700 [exp] 676 / 0 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G049100 [exp] 663 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 657 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.019G078400 [exp] 656 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G135400 [exp] 636 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 634 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 573 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G009200 [exp] 568 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028232 pacid=23166547 polypeptide=Lus10028232 locus=Lus10028232.g ID=Lus10028232.BGIv1.0 annot-version=v1.0 ATGTCGATAACCACCGTCACCTTCCTCCTCTTCTGTTTCCTCTTCTTATCCTCTCCCGTCCATTCCGACGACCTCCAACTCCTCCTCACCCTCAAATCCT CCTTTCTAAACCCAAAAAACACTCTCGTTTTCGACTCCTGGACCTCCTCCAACTCCCCCTGCAACTTCACCGGAATCACCTGCTCCCAAAATTCCGTCAC CGAGATTAATCTCTCTGCCTCCAATTTACAGGGCTCCCTCCCCCTGGACTCCATCTGCCAGCTCGATTCCTTGGAGAAGCTCTCCCTCAGCCGGAATTCC CTGACTGGAGTTGTCTCCAATGATTTGAACAGCTGCACCAATCTCCGTTACTTCGATTTAGCCAATAATTTCTTCACCGGGCAGTTCCCTGACATCTCTG CTCTTTCTCACCTCCAGCATCTCTACTTGAACCAAAGCGGATTCAGCGGCGTATTCCCGTGGAAATCTCTTGCAAACGAACTCCTCACGCTTAGCTTGGG AGACAACTCCTTCGATCCGACGCCGTTTCCGATTGAGATACTTCGGTTGACCAAGCTTCGCTGGATTTACTTGACCAATACCAGCCTTGAAGGGACAATT CCGGAAGCAATCGGTGGCCTCACCGACCTTGTTAACCTGGAGCTCTCGGAGAATCACCTCACTGGAGAAATTCCGTCTTCGATTGGGAATCTAAAGAATC TCTGGCAGTTTGAGATTTATGATAACAATCTGACGGGAGAATTACCGGCAGGAATCCGGAACTTGACCCGGTTGGAGAATTTCGATGCATCCAGGAATCA TCTCAAGGGGAACTTGTCGTATGTTAGGTACTTGACTAATCTCGTCACCCTCCAAATGTTTCACAACGAGTTTTCGGGAGAAATCCCGCCGGAATTGGGC CAATTTCAGAAGCTCGTCAACCTTTCCTTGTACGAAAATCAGCTCACCGGTCCACTGCCGCAAGATATTGGCTCTCTGTCGAATTTTGATTTCATCGACG TTTCCGAGAATTACCTGACCGGTCCAATTCCGCCAAACATGTGCAATAAGGGTAAGATGAGGGGAATTCTGATGCTTCAGAACAACCTCTCCGGCAATAT CCCGACGAGTTACGGCGACTGCAAGACCCTCCTGAGATTCAGGGTCAGCAAGAATTCCCTCTCTGGCCAAGTCCCTCCTGGAATTTGGGGGTTGCCTAAC GTAAACATCATAGACATAGAGAATAATCAGCTGGAAGGTTCGTTGACCGCCGACATCGGAGAGGCGAAATCGCTAGGACAGCTTTTCGTAAGCAACAACC GTCTCTCCGGTGATCTGCCAGAGGAGATTTCTCAGGCCAAGTCGCTGGTTTCAATTTCGTTGAGCGATAATCAGTTTTCTGGGAAAATTCCTGAGAGTAT TGGAGGATTGAAGTTGTTGAGCAGTCTTCAAATGCAGAATAATCAGCTGACCGGTCCAATTCCAGAGTCTTTAGGCCTCTGCAATTCTCTCAGCGATATA AACATGGCTCAGAATTCCATCTCCGGCCAAATCCCGTCCTCGTTGGGATCTCTACCGACTCTAAACTCTCTAAACCTAACAGACAACAAGCTGTCAGGCA GAATTCCAGCCACGTTGTCGTCGTTGAAATTGAGCCTTCTGGATCTATCTTATAACAGATTAACAGGTAGTATCCCTGTTTCTCTTTCAATCGATGCATA CAACGGAAGCTTCAATGGAAACCCTTGGCTCTGTAGTGAAACGGTCAACGGATTCAAAAGGTGTCGTCCTGTATCAGGAATGAGCAAAGATGTTCGAACC CTTTTGACCTGTTTGGCAGTCGGGTCATTGATATTGCTTGTTTCGTTTGGATGTTCCTTACATTTGAAGAAGAGAGAAAAGGAAGAAGATCGATCGTTGA AAGCAGAGAATTGGGATGTGAAATCATTCCACGTTCTGACGTTCAGCGAGGACGACATTGTGGAGTCAATTAAGCAAGAGAATATCATAGGGAAAGGAGG GTCCGGTAGTGTTTACAAGGCCACTCTCGCCAACGGCAGAGATGTGGCAGGGGGACATATATGGACCGCCACCACTCAAGATGGCAAGCACAATCGGAGC ACGACACCGATGCTTGGTAAGCGAGGTGGCGGCGGGGGGTGGGGTGGGGGGAGGAAGTCCAAGGAACTTCATGCGGAGGTTCAGACACTGAGTTCGATTA GGCATGTCAATGTGGTGAAGCTGTATTGCTGCATAACCAGCGAGGATTCGAGTCTGTTGGTGTACGAGTACATGTCGAACGGCAGCCTTTGGGACCGGCT CCACGCGTCTCAGAAAGTCGAGCTCGATTGGGATACGAGGTACGAGATAGCTGTTGGTGCGGCGAAAGGGTTGGATTACCTACACCATGGATGTGAGAGG CCTGTGATTCATAGGGATGTCAAGTCCAGTAACATTTTGTTGGACGAGTTTTTCAAGCCGAGGATTGCTGATTTTGGACTAGCTAAGATTGTTCAATCCA GTTCAGGCAAGGATTCCACCCGAGTCATTGCTGGAACTCATGGATACATAGCTCCTGAATATGCATACACGTACAAAGTGGACGAAAAGAGCGACGTGTA TAGCTTCGGGGTGGTGTTGATGGAGCTAGTGAGTGGGAAGAGGCCGATAGAGCCCGAATTCGGAGAGAACAAAGACATAGTTGATTGGATAAGCAGCAAG TTAAAGACTAAGGAAAGTGTTTTCAGCATCGTGGACTCGAGAATACCAGATGTTTACAGAGAGGAAACGATTAAGGTGCTGAGGATTGCGATCCTCTGCA CAGCAAAGCTGCCGAATTTGAGGCCAACAATGAGAAGCGTGGTGCAAATGCTAGAAGAGGCCAAGCCATGTCAACTGCTGGGAATCATCATTAGCAAAGA TGAAAAGAATTCTTCGGGGAGAAAGTCAACTTCAGAACATTGA
AA sequence Show only first row Show all	>Lus10028232 pacid=23166547 polypeptide=Lus10028232 locus=Lus10028232.g ID=Lus10028232.BGIv1.0 annot-version=v1.0 MSITTVTFLLFCFLFLSSPVHSDDLQLLLTLKSSFLNPKNTLVFDSWTSSNSPCNFTGITCSQNSVTEINLSASNLQGSLPLDSICQLDSLEKLSLSRNS LTGVVSNDLNSCTNLRYFDLANNFFTGQFPDISALSHLQHLYLNQSGFSGVFPWKSLANELLTLSLGDNSFDPTPFPIEILRLTKLRWIYLTNTSLEGTI PEAIGGLTDLVNLELSENHLTGEIPSSIGNLKNLWQFEIYDNNLTGELPAGIRNLTRLENFDASRNHLKGNLSYVRYLTNLVTLQMFHNEFSGEIPPELG QFQKLVNLSLYENQLTGPLPQDIGSLSNFDFIDVSENYLTGPIPPNMCNKGKMRGILMLQNNLSGNIPTSYGDCKTLLRFRVSKNSLSGQVPPGIWGLPN VNIIDIENNQLEGSLTADIGEAKSLGQLFVSNNRLSGDLPEEISQAKSLVSISLSDNQFSGKIPESIGGLKLLSSLQMQNNQLTGPIPESLGLCNSLSDI NMAQNSISGQIPSSLGSLPTLNSLNLTDNKLSGRIPATLSSLKLSLLDLSYNRLTGSIPVSLSIDAYNGSFNGNPWLCSETVNGFKRCRPVSGMSKDVRT LLTCLAVGSLILLVSFGCSLHLKKREKEEDRSLKAENWDVKSFHVLTFSEDDIVESIKQENIIGKGGSGSVYKATLANGRDVAGGHIWTATTQDGKHNRS TTPMLGKRGGGGGWGGGRKSKELHAEVQTLSSIRHVNVVKLYCCITSEDSSLLVYEYMSNGSLWDRLHASQKVELDWDTRYEIAVGAAKGLDYLHHGCER PVIHRDVKSSNILLDEFFKPRIADFGLAKIVQSSSGKDSTRVIAGTHGYIAPEYAYTYKVDEKSDVYSFGVVLMELVSGKRPIEPEFGENKDIVDWISSK LKTKESVFSIVDSRIPDVYREETIKVLRIAILCTAKLPNLRPTMRSVVQMLEEAKPCQLLGIIISKDEKNSSGRKSTSEH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	0	1
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10007232 [exp]	1.4	0.8025
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	3.7	0.7955
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	6.0	0.7948
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	7.7	0.7877
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10022096 [exp]	8.5	0.7214
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	14.7	0.7292
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	15.4	0.6966
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	16.1	0.7384
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	16.4	0.6954
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	19.2	0.7742

Compare expression of checked genes

Lus10028232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.