Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028233 pacid=23166481 polypeptide=Lus10028233 locus=Lus10028233.g ID=Lus10028233.BGIv1.0 annot-version=v1.0 ATGCCACATGTGCATCATATATACTTCTCCGCTCAAACTAGAGAACAAAAATTCGCCCCCAAATTCTCCCGATCCTCTCCGCTGCGGCCGGCTTCGTCTA CGCCAACGCTACTGATTGCTCCCCTCACTAACTGCTCTCCCTCCAACGCCTCCTCCATCCCCTCACTATGCAGATTCCCTCCCCCCTTCTCCATTTACAA TCTATTCAATCCTCACTCCTCTGTTGCCGCCGATGCAGTCTCGGACCTAGATCTGCTCTGCTTCCAGATCTTCCGGATGAATAAGCCTACGTTTCTCAAT TTCCCACACCAAGTGAATAGAAGCTTATTAGGGGGGACTAATCAAGGGAGGGGAAACAAGTTTACGAGTCCAGAAGGGGATGAAGGAGACGCTTGA
AA sequence Show only first row Show all	>Lus10028233 pacid=23166481 polypeptide=Lus10028233 locus=Lus10028233.g ID=Lus10028233.BGIv1.0 annot-version=v1.0 MPHVHHIYFSAQTREQKFAPKFSRSSPLRPASSTPTLLIAPLTNCSPSNASSIPSLCRFPPPFSIYNLFNPHSSVAADAVSDLDLLCFQIFRMNKPTFLN FPHQVNRSLLGGTNQGRGNKFTSPEGDEGDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028233 [exp]	0	1
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	3.3	0.9111
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	5.7	0.8916
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	6.7	0.8487
					Lus10000400 [exp]	7.3	0.8815
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10006127 [exp]	7.9	0.7806
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	8.5	0.8815
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	9.5	0.8815
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	10.4	0.8815
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	10.5	0.8730
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	11.2	0.8815

Compare expression of checked genes

Lus10028233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.