Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49660 1135 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G09970 632 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 569 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 533 / 2e-174 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G19700 526 / 1e-171 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G72180 516 / 5e-168 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 493 / 8e-159 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65710 491 / 3e-158 HSL2 HAESA-like 2 (.1) AT3G49670 491 / 7e-158 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 486 / 3e-156 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007233 [exp] 1737 / 0 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028232 [exp] 609 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007232 [exp] 608 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10015393 [exp] 561 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 556 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 533 / 3e-174 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10009476 [exp] 530 / 5e-173 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 505 / 8e-163 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10013562 [exp] 494 / 2e-159 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111700 [exp] 1355 / 0 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G106800 [exp] 657 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 605 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G058100 [exp] 574 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 570 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.019G078400 [exp] 563 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G135400 [exp] 545 / 3e-178 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 540 / 8e-177 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.003G107600 [exp] 517 / 1e-167 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 511 / 3e-165 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10028234 pacid=23166409 polypeptide=Lus10028234 locus=Lus10028234.g ID=Lus10028234.BGIv1.0 annot-version=v1.0 ATGGCTCTCCGCCTGCTGATTTCCTTACTGTACGTCCTACTTTTTGCTCTTACTTCTCCTCTGCAAGCAATCAGCAATAACCAGTCTGAGTTCTTCAGTA TTCTCAAGACTTCCCTGACCGGAAATGGTTTGCCTGATTGGGATGTCGATGGTGGGAAGCCTTTCTGCAACTTCACTGGTATTACCTGCAACCCCCAAGG TTATGTTGAAGAATTTGACATATCATGGAGGCGAATCTATGTTCGTTTCCCTGCTGGAATTTGCTCCTACCTCCCACAATTGCGAGTTATCCGGCTCGGA CACAACCATCTCCATGATAGTGACTTCCTCAACAGCGTTGTCAACAACTGCTCTTTCCTTGAAGAATTGGACATGGGTGCTCTGTTTCTGATAGGAAAGC TACCAGATTTCTCTCCACTGAGACATCTGAAGGTGCTTAACATGTCTTACAACTTCTTCACAGGTGAATTCCCACTTTCGGTCACCAATCTCACCAATCT TGAGCTGTTGGATTTCAACGAGAATACCCACCTCGACTCGTGGCAACTTCCCGAGAGCTTTACCAGGCTGACAAAGCTCAAAACCATGATCTTGACTACA TGTGCGGTGCGTGGTCAAATCCCAGCATGGTTAGGGAACATGACTTCTCTTGTCGATCTTGAGCTAAGTGGGAATTTCCTGACGGGAAGGATTCCTGCAG AGCTTGGTTTGCTGAAGAATCTCAAGTCACTTGAGCTCTACTACAACTATGAGCTTTCTGGCAACATACCTGAGGAACTTGGCAACTTGACAGAGCTCAT AGACTTGGACATGTCAGTGAACAAGTTAACAGGGAACCTTCCGGAATCTATATGCCGCCTTCCAAAGCTTGAAGTACTTCAGCTGTACAATAACAGTCTC ACTGGAGAAATTCCAATTTCTATTGCTGAGTCACCATCACTGCGCATATTGTCATTATATGGCAACACTTTCACAGGGGAGGTTCCACAAGGCCTTGGGA AGCACTCTCATATGATTGTTCTAGATTTGTCAGAGAATTGCCTTTCAGGTCCTTTGCCGGCAGAGATTTGCCAGGGAGGTAAACTAATGTACTACCTTGT CTTGGATAACATGTTTTCAGGGGAGTTGCCACATAGTTTGGTACAATGCAAGTCTCTGTTAAGGTTCCGAGTCAGTCACAACCGTCTCGAGGGTTCAATA CCTCAAGGTCTTCTGGGTCTTCCCCATGCTTCCATCATTGATTTGGGTTTCAATAACTTCAGTGGTTCGATTGACAAATCAATTGCAATGGGAAGAAATT TGTCTGAACTCTTCATGCAGAGCAACAAGATTTCAGGAGTCCTACCTCCTGAAATCTCAGGTGCTATCAATCTGGTTAAGATTGATCTCAGCAATAATAT CCTCTCGGGGCCGATTCCTGTTCAGATTGGAAACCTGAGAAAGCTTAATTTACTGATGTTGCAAGGCAACAAGCTGGATTCATCTATTCCCAACTCACTT TCTTTCCTGAAATCTCTTAACGTTCTTGATCTTTCAAATAACCTTTTGACTGGAAGTATCCCTGAGAGCGTCAGTGAACTGTTACCAAATTCTATCGATT TTTCAAACAATAATCTTTCTGGTCCCATCCCACTCATACTGATAAAAGAAGGGACGGTGGAGAGCTTCTCAGGGAATCCTGGCCTTTGTGTTCCAGTTCC AGTTACTTCATCCAAACAAACATTCCCCATTTGCTCGCAAAGAAACTACCGGAAGAAGCACAACTCCGTCTGGGCAATCAGCATCTCGGTAGTGATCATA GTGGTCGGAATTCTGCTGCTTCTAAAACGCCGATTCGGTAGAAAAAGGGCAATGATGGAGCCCGATGAGACTGTGTCTACCTCATTCTTTTCATATGATG TGAAGAGCTTCCACCGAATAAGTTTCGACCAGAGAGAGATCCTTGAAGCTTTGGTTGATAAGAACATAGTGGGGCATGGCGGTTCTGGCACAGTGTACAA GATTGAGCTAAGCAGTGGTGAAGTTGTGGCCGTGAAGAGACTGTGGAGCAAGAGAAGCAAAGATTCTGCAGCAGATGTTCAGTTGCTTCTGGACAAGGAA TTGAAGACTGAGGTTGAGACTCTGGGAAATATAAGGCATAAAAACATAGTCAAGCTTTACTGTTACTTCTCCAGCTTGGACGTCAACTTGCTGGTCTATG AGTACATGCCAAATGGAAATCTATGGGATGCACTTCATAAAGGTTGGACTCATCTGAATTGGCCTACCCGCCATCAGATAGGACTCGGGGTTGCTCAGGG CCTAGCATACCTGCATCATGACCTCTTGCCACCTATCATCCACCGCGACATCAAGTCAAGCAACATCCTTTTGGATATTAACAACCATCCAAAGGTGGCA GATTTTGGGATAGCAAAGGTTTTGCAAGCTAGAGGAGGAAAAGATTCCACAACGACTCTTATTGCAGGCACCTACGGTTACTTGGCCCCAGAATATGCAT TCTCATCAAAGGCAACAACTAAGTGCGATGTGTACAGCTTCGGGGTTGTGCTGCTGGAACTAATAACTGGGAGGAAGCCTGTAGAAGCAGACTTTGGAGA CAACAAGAACATCATTTACTGGGTTTCAACGAAAGTGGAAACCAAGGAAGGGGTCATAGAGGTCTTAGACAAAAAGCTATCGGGTTCTTTCAGGGATGAG ATGATCCAAGTCCTAAGAATTGCAATCCGATGCACCTACAAGAATCCAGCTCTAAGGCCAACCATGAGTGAGGTTGTCCAACTGTTGATTGAGGCAGATC CTTGCAAATGCAAGTCGTCAAACAAGGCCAAGGATGCATCAAATGTGACCAAGATCAAAAACCCATTTGACTTGTGA
AA sequence Show only first row Show all	>Lus10028234 pacid=23166409 polypeptide=Lus10028234 locus=Lus10028234.g ID=Lus10028234.BGIv1.0 annot-version=v1.0 MALRLLISLLYVLLFALTSPLQAISNNQSEFFSILKTSLTGNGLPDWDVDGGKPFCNFTGITCNPQGYVEEFDISWRRIYVRFPAGICSYLPQLRVIRLG HNHLHDSDFLNSVVNNCSFLEELDMGALFLIGKLPDFSPLRHLKVLNMSYNFFTGEFPLSVTNLTNLELLDFNENTHLDSWQLPESFTRLTKLKTMILTT CAVRGQIPAWLGNMTSLVDLELSGNFLTGRIPAELGLLKNLKSLELYYNYELSGNIPEELGNLTELIDLDMSVNKLTGNLPESICRLPKLEVLQLYNNSL TGEIPISIAESPSLRILSLYGNTFTGEVPQGLGKHSHMIVLDLSENCLSGPLPAEICQGGKLMYYLVLDNMFSGELPHSLVQCKSLLRFRVSHNRLEGSI PQGLLGLPHASIIDLGFNNFSGSIDKSIAMGRNLSELFMQSNKISGVLPPEISGAINLVKIDLSNNILSGPIPVQIGNLRKLNLLMLQGNKLDSSIPNSL SFLKSLNVLDLSNNLLTGSIPESVSELLPNSIDFSNNNLSGPIPLILIKEGTVESFSGNPGLCVPVPVTSSKQTFPICSQRNYRKKHNSVWAISISVVII VVGILLLLKRRFGRKRAMMEPDETVSTSFFSYDVKSFHRISFDQREILEALVDKNIVGHGGSGTVYKIELSSGEVVAVKRLWSKRSKDSAADVQLLLDKE LKTEVETLGNIRHKNIVKLYCYFSSLDVNLLVYEYMPNGNLWDALHKGWTHLNWPTRHQIGLGVAQGLAYLHHDLLPPIIHRDIKSSNILLDINNHPKVA DFGIAKVLQARGGKDSTTTLIAGTYGYLAPEYAFSSKATTKCDVYSFGVVLLELITGRKPVEADFGDNKNIIYWVSTKVETKEGVIEVLDKKLSGSFRDE MIQVLRIAIRCTYKNPALRPTMSEVVQLLIEADPCKCKSSNKAKDASNVTKIKNPFDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	0	1
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	1.0	0.9932
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	2.0	0.9367
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	4.9	0.9273
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	5.2	0.9315
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	7.3	0.9161
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	7.5	0.9215
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	7.7	0.9269
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	8.1	0.9127
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	9.5	0.9226
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	9.7	0.8670

Compare expression of checked genes

Lus10028234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.