Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49650 836 / 0 XK2, XK-2 XYLULOSE KINASE 2, xylulose kinase-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007234 [exp] 957 / 0 AT5G49650 712 / 0.0 XYLULOSE KINASE 2, xylulose kinase-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077600 [exp] 928 / 0 AT5G49650 886 / 0.0 XYLULOSE KINASE 2, xylulose kinase-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00370 [flax] [poplar] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [flax] [poplar] Actin_ATPase PF02782 [flax] [poplar] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028235 pacid=23166520 polypeptide=Lus10028235 locus=Lus10028235.g ID=Lus10028235.BGIv1.0 annot-version=v1.0 ATGGCGAATCCAGCCCTCCCTCCCGGTTCCCTTTTCCTCGGCTTTGATTCTTCTACCCAGTCGTTGAAGGCAACGGTTCTCGACTCTGATCTCAATGTCG TCCAATCAGAACAAATTCATTTCGATTCTGATCTCCCGCATTACAAGACTAAGGATGGCGTCTACAGAGACCCATCTGACAGCGGCCGGATTGTTTCCCC GACATTGATGTGGACGACATTGATGTGGGTTGAAGCTCTTGATCTGGTGCTTCACCGTCTCTCCAAATCCGGTTTGGAATTTGGCAAGGTTGCTGCTCTA TCCGGCAGCGGACAGCAACACGGCAGCGTTTACTGGAAGAATGGCAGCTCTGCGTTGTTCTCATCACTCGACTCCGACAAGCCATTGGCTGAACAATTTC GCGGTGCCTTTTCGATCAACGAATCCCCTATATGGATGGACAGCAGCACCACCGCCCAATGTAGGGAAATCGAGGAAGCTGTTGGTGGAGCGATTGAGCT TGCTCGAATCACTGGCTCTCGTGGGTACGAAAGGTTCACTGGACCCCAAATCAAAAAGATATTTCAGACCCAGCCAGAAGTTTATCACGGTACTGAGAGG ATTTCTCTGGTTAGCTCCTTTATGGCTTCTATTTTCGCTGGCAAGTATGCTTCCATTGATCATGCCGATGGCGCTGGGATGAATTTGATGGATATTCAGA AGAAGGCCTGGTCTAAACTTGCTTTGGAGGCAACTGCACCTGGTTTAGAGGAAAAGCTTGGGGAGTTGGCTGCTGCATATGCTGTTGTTGGTTCTATTGC TCCTTATTTTGTGGATAGATACAAGTTTGATAAGAATTGTTTGGTTGTGCATTGGTCTGGAGATAACCCTAACAGTTTAGCTGGTTTAACTTTGAGCGTA CCAGGCGACCTGGGAATTAGTCTCGGCACCAGTGACACTGTCATTGGGATATCTAGCGATCCTAAACCAGGGTTGGAAGGTCATGTCTTCCCTAATCCTG TGGATGCAAAAGGTTACATGGTAATGTTATGCTACAAAAATGGGTCTTTAACTCGCGAAGATGTGCGTAATCGTTGTGCTGGTAGCTCATGGGAGGTCTT CAACAAACTCTTGGATCAAACTCCGGCGCTCAATGGTGGGAAGTTGGGTTACTACTACAAGGACCACGAAATCCTTCCTCCACTTCCAATTGGTTTCCAT CGCTACATCCTCCAAAATTTCACTGGAGATACCCTAGAAGGCGTGACTGAACAGGAAGTGAAAGAATTTGATCCTGCTTCCGAGGTGAGAGCTATAGTCG AGGGCCAGTTTCTGTCTATGAGAGGTCATGCTGAAAGGTTTGGGATGCCAGTACCTCCAAAGCGTATAATAGCCACAGGGGGAGCGTCATCTAACCATAG CCTATTGAAGTCAATAGCTTCAGTATTCGGGTGTGGAGTTTACACCGTCCAAAGACCTGATTCTGCTTCTCTAGGAGCTTCTTTGAGAGCTGCGCATGGA TGGCTCTGCGAGAAGAAGGGTAGCTTTGTTCCGATAGCAAGCATGTATGTCGAGAAAGCGTCGCTGAGCTGCAAGCTGTCAGCTGGTGCAGGGAGCGAGG AGGTCGCCTCGAAATATGGCGTGATGTTGAAGAAGAGAATGGAGATAGAGAAGCGGCTGGTTGCCAAGTTGGGACGCTAA
AA sequence Show only first row Show all	>Lus10028235 pacid=23166520 polypeptide=Lus10028235 locus=Lus10028235.g ID=Lus10028235.BGIv1.0 annot-version=v1.0 MANPALPPGSLFLGFDSSTQSLKATVLDSDLNVVQSEQIHFDSDLPHYKTKDGVYRDPSDSGRIVSPTLMWTTLMWVEALDLVLHRLSKSGLEFGKVAAL SGSGQQHGSVYWKNGSSALFSSLDSDKPLAEQFRGAFSINESPIWMDSSTTAQCREIEEAVGGAIELARITGSRGYERFTGPQIKKIFQTQPEVYHGTER ISLVSSFMASIFAGKYASIDHADGAGMNLMDIQKKAWSKLALEATAPGLEEKLGELAAAYAVVGSIAPYFVDRYKFDKNCLVVHWSGDNPNSLAGLTLSV PGDLGISLGTSDTVIGISSDPKPGLEGHVFPNPVDAKGYMVMLCYKNGSLTREDVRNRCAGSSWEVFNKLLDQTPALNGGKLGYYYKDHEILPPLPIGFH RYILQNFTGDTLEGVTEQEVKEFDPASEVRAIVEGQFLSMRGHAERFGMPVPPKRIIATGGASSNHSLLKSIASVFGCGVYTVQRPDSASLGASLRAAHG WLCEKKGSFVPIASMYVEKASLSCKLSAGAGSEEVASKYGVMLKKRMEIEKRLVAKLGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	0	1
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	2.0	0.9361
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	2.2	0.9378
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	2.8	0.9170
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	3.0	0.9327
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	4.2	0.9139
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	5.1	0.8967
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	7.1	0.9012
AT4G32190			Myosin heavy chain-related pro...		Lus10041037 [exp]	8.4	0.9103
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	8.9	0.9142
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	8.9	0.8873

Compare expression of checked genes

Lus10028235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.