Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51580 209 / 1e-58 RNA-binding KH domain-containing protein (.1) AT5G15270 198 / 4e-55 RNA-binding KH domain-containing protein (.1.2) AT5G64390 174 / 2e-45 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G53060 169 / 4e-44 RNA-binding KH domain-containing protein (.1.2) AT2G22600 144 / 9e-36 RNA-binding KH domain-containing protein (.1) AT4G18375 143 / 1e-35 RNA-binding KH domain-containing protein (.1.2) AT1G14170 139 / 6e-35 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 132 / 6e-32 RNA-binding KH domain-containing protein (.1) AT5G09560 103 / 1e-22 RNA-binding KH domain-containing protein (.1) AT4G26000 100 / 6e-22 PEP PEPPER, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007236 [exp] 1188 / 0 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10034831 [exp] 224 / 3e-63 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10005232 [exp] 207 / 9e-58 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 197 / 1e-54 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 189 / 3e-51 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10005915 [exp] 187 / 5e-51 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 182 / 5e-49 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 176 / 2e-46 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10022390 [exp] 171 / 5e-45 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112200 [exp] 681 / 0 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 230 / 7e-66 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.017G085500 [exp] 202 / 2e-56 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 198 / 4e-54 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 196 / 3e-53 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.012G017200 [exp] 192 / 4e-52 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 189 / 8e-52 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 175 / 7e-47 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 170 / 3e-45 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 170 / 3e-44 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10028237 pacid=23166577 polypeptide=Lus10028237 locus=Lus10028237.g ID=Lus10028237.BGIv1.0 annot-version=v1.0 ATGCCTTTCTCACCGCCGAGCTACCCGTCTATCCAAGTCGCCTTTATATTCTGTAAGTACCTCTATTCGTTCGCTATATCAAAATCCATCAGTTCTGCTC CCAAAACCACTAATCTTTGGGTGGGGGAGTTTTCTGTTCCGGGACTGTATGCTGTCATGTCTGCACAATTAACACCTGCGAAGAGACCGAATGATGACGA TCAGACTGAATCAAATGGTAAAGAGAAGTTGCAGAAGACCCTGAGCTCTAATGAGCAGCCTTTGAGATCTTCAAACGGAAATGTAAATTTCAGAGTGTTG TGCCCTACTTCCAAGGTTGATCGTATTTTTGGGGAAGCTGGGCAAGTAATAACTCAAATTCTTGAAGAAACGGGGTTCTGTGTCAGAGTTGAGGAGGCTG TTGCTGGATGTGATGAGAGGGTGGTCGTTATTGAGAGTTCTCGTGAAAATGCAGAAGATGTCAATGCAGAGAGTAAGGAGAATGCTAATGGAGCTGACAA AGAAGAGAGCAAGGAAGGCGGCGATGGAGAGGCTAATGCAGCAGCAGAAGATGATAAAAAGGACAGCACTTTTGCTTGTGGAGAAAAGGATGCTCTTCAT TTGGATGAAATGTCTGCGAATGGAACTTCTGCATTGAAGGCCTTGCTGTGTATCTTTGAAAGACTTGTTGAAGCAGAAACAGGGACAGAAGGAGGAGACG AGAAAAATGGCAAGCCTCCTACAATAATTTTGAGGTTACTTGTAATCTCCAGTCAGATTGGATGCATTTTGGGAAAAGGTGGCAGTATAATCAAGCTAAT GGCAAATCAAAGTGGTGCGCAGATTCGAATACTTCCCAGGGATAAACTTCCAATATGTGTATCAGCTCGAGATGAGCTACTTCTGATAACTGGAGAGATT GATGCTGTTAAGAGAGCTCTTTATTCCGTTTGTATGAAGCTCTTAGAAAATTCACGTCAAGATCATGAATTGGTTCCTGCCACCTCGTCTGGGCTTTCAT CTCAATCAGTAGATCATCTTGGTCCGAGAGCAGAAACTCATGCACATTATCGAGGACCCCCAGGTCCTCCTGGACCTCCTGATTTCCCCAAAATTGGCAT TCGGGGTCAAATGGGGCCTGCTACTGATGTACTAACCTTGCGCTTACTCTGCCCTGATGGGAGGGCAGGAGTTGTCATCGGGAAAGGAGGATCTATGGTA AAGCTCCTTCTACAAGAGACTGGCTGTGACGTTAAGGTTATGGACCCTGTCCCTGACTGTCAAGATCGTGTAGTAGTTATCTCTGCAGTGCACCCAGGAG ATAGAATATCAGGTGTTCAAGATTGCGTGCTTCGTCTACTGACTAAGATATTGAATACTCGACCTGATAACCAGGATAAGGCTGTGACCCGACTCCTTAT TACCTCAGATCAAATTGCTTGTCTACTTGGTAAGGCTGGTTCAATCATGGCTGAAATGAGAAAGTCAACAGGTGCCTATATTCGTATTCTACCAAAGAAT CAGATTCCAAAATGTGCTTCTGAAGGTGAAGAAGTTTTGCAGATAAATGGCGAGTTGCAAAGAGTTCTGGAAGCAATGGTGCAGATAACCACAAGATTAC AGCATCATTTCTTTGGCGACACAGTGCCTTCTAATGGCCACCCTTCACATCCTGCCTTTTTAGATCATACCCCTCCGTTTCCTCATCCATTTCCAGGGAG GAGGGAAATTTCACCTTCATTTATGCCATTCCACAATTTTAATGGCATGAGTGTCCCTCCTCAACGTCCTGGTTTCCCTCCCCTTGATGATCCTTCTCCA TTCATGCACAATCTTCACAGACCTGGGATGCCCCCACATTTATCTGAACGAAAACCATGGGGTCCTCAGGGACTTCCTGAAAGTGGTGCTCCAGTAGGCT TCCCGGACTTTCCCGGACCACCTCACGGAAGAATTTCTGGTCTTGAAGGTAGTCACCCAGCTATCACTACAAGTACTACAGTCGAAGTAGTTGTTCCACG TTCAATTGTTCCAGTAATTTACGGAGAGGATGGGGCATGCTTGATGCAAATCCGACAGATATCTGAAGCAAAAATTATCATCACTGATCCAAAGCCTGGA GCAATAGAGACTGTTATCATTATATCTGGTACACCTGAGCAGACTAATGCTGCACAGAGTCTTATCCAAGCTTTTGTGATGAGTGAACAACAATCTGCTT GA
AA sequence Show only first row Show all	>Lus10028237 pacid=23166577 polypeptide=Lus10028237 locus=Lus10028237.g ID=Lus10028237.BGIv1.0 annot-version=v1.0 MPFSPPSYPSIQVAFIFCKYLYSFAISKSISSAPKTTNLWVGEFSVPGLYAVMSAQLTPAKRPNDDDQTESNGKEKLQKTLSSNEQPLRSSNGNVNFRVL CPTSKVDRIFGEAGQVITQILEETGFCVRVEEAVAGCDERVVVIESSRENAEDVNAESKENANGADKEESKEGGDGEANAAAEDDKKDSTFACGEKDALH LDEMSANGTSALKALLCIFERLVEAETGTEGGDEKNGKPPTIILRLLVISSQIGCILGKGGSIIKLMANQSGAQIRILPRDKLPICVSARDELLLITGEI DAVKRALYSVCMKLLENSRQDHELVPATSSGLSSQSVDHLGPRAETHAHYRGPPGPPGPPDFPKIGIRGQMGPATDVLTLRLLCPDGRAGVVIGKGGSMV KLLLQETGCDVKVMDPVPDCQDRVVVISAVHPGDRISGVQDCVLRLLTKILNTRPDNQDKAVTRLLITSDQIACLLGKAGSIMAEMRKSTGAYIRILPKN QIPKCASEGEEVLQINGELQRVLEAMVQITTRLQHHFFGDTVPSNGHPSHPAFLDHTPPFPHPFPGRREISPSFMPFHNFNGMSVPPQRPGFPPLDDPSP FMHNLHRPGMPPHLSERKPWGPQGLPESGAPVGFPDFPGPPHGRISGLEGSHPAITTSTTVEVVVPRSIVPVIYGEDGACLMQIRQISEAKIIITDPKPG AIETVIIISGTPEQTNAAQSLIQAFVMSEQQSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	4.9	0.8114
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	9.9	0.7786
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	10.8	0.7495
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	14.9	0.7331
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	16.6	0.7294
					Lus10024697 [exp]	18.4	0.7547
AT2G04860			Tetratricopeptide repeat (TPR)...		Lus10032904 [exp]	18.9	0.7538
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10000119 [exp]	20.8	0.6763
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	22.8	0.7428
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000831 [exp]	23.7	0.6946

Compare expression of checked genes

Lus10028237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.