Plant FIBer expression Database

Lus10028241 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37810 66 / 2e-15 unknown protein
AT5G10310 41 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007240
[exp]
144 / 3e-45 AT4G37810 75 / 2e-17 unknown protein
Lus10011591
[exp]
63 / 5e-14 AT4G37810 102 / 6e-29 unknown protein
Lus10011570
[exp]
60 / 1e-12 AT4G37810 79 / 8e-20 unknown protein
Lus10019254
[exp]
52 / 8e-10 AT4G37810 74 / 5e-18 unknown protein
Lus10025740
[exp]
43 / 2e-06 AT5G10310 100 / 2e-28 unknown protein
Lus10035922
[exp]
40 / 4e-05 AT5G10310 100 / 2e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G112900
[exp]
75 / 2e-18 AT4G37810 90 / 9e-24 unknown protein
Potri.007G095400
[exp]
48 / 4e-08 AT5G10310 105 / 2e-30 unknown protein
Potri.005G073700
[exp]
42 / 7e-06 AT5G10310 102 / 7e-29 unknown protein
Potri.003G042300
[exp]
40 / 2e-05 AT3G13898 80 / 4e-20 unknown protein
PFAM info
Representative CDS sequence
>Lus10028241 pacid=23166546 polypeptide=Lus10028241 locus=Lus10028241.g ID=Lus10028241.BGIv1.0 annot-version=v1.0
ATGATGGTGAGGAGTCGGACTATAGGGTCGAGGCCCCCAAAATGTGATGACATAAGGTGTCACTCCTGCGGCGGCCAATGCGTAGCCGTCCAAGTCCCAT
GCGACGGCCAATGCGTAGCCGTCCAAGTCCCAGTGACGGCAGCGGCGCAACCTCAAACAAACTATTTCACTCATCATGTTGGTAGCGTTCCGACAACTGA
TGGTTACAACAGAGGTGGTGAAGATTTCTCGAATTACAAGCCAATGAGTTGGAAGTGCAAATGTGGCAGCTTCATATTCAATCCTTGA
AA sequence
>Lus10028241 pacid=23166546 polypeptide=Lus10028241 locus=Lus10028241.g ID=Lus10028241.BGIv1.0 annot-version=v1.0
MMVRSRTIGSRPPKCDDIRCHSCGGQCVAVQVPCDGQCVAVQVPVTAAAQPQTNYFTHHVGSVPTTDGYNRGGEDFSNYKPMSWKCKCGSFIFNP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37810 unknown protein Lus10028241
[exp]
0 1
Lus10022836
[exp]
6.5 0.7362
AT4G17760 damaged DNA binding;exodeoxyri... Lus10035367
[exp]
11.6 0.7214
AT3G45740 hydrolase family protein / HAD... Lus10040363
[exp]
24.9 0.6884
AT3G04380 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-dom... Lus10022657
[exp]
26.5 0.6740
AT5G19370 rhodanese-like domain-containi... Lus10000413
[exp]
47.4 0.6777
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10035637
[exp]
54.6 0.6556
Lus10007080
[exp]
101.5 0.6174
AT5G59750 DHBP synthase RibB-like alpha/... Lus10040865
[exp]
101.7 0.6484
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Lus10012682
[exp]
114.3 0.6062
AT4G29530 Pyridoxal phosphate phosphatas... Lus10008573
[exp]
116.6 0.6104

Lus10028241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.