Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58370 998 / 0 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G08160 946 / 0 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G10050 902 / 0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G38650 257 / 2e-76 Glycosyl hydrolase family 10 protein (.1) AT4G33830 221 / 5e-63 Glycosyl hydrolase family 10 protein (.1) AT4G33840 214 / 2e-60 Glycosyl hydrolase family 10 protein (.1) AT4G33860 203 / 2e-56 Glycosyl hydrolase family 10 protein (.1) AT4G38300 187 / 7e-54 glycosyl hydrolase family 10 protein (.1) AT4G33810 188 / 2e-51 Glycosyl hydrolase superfamily protein (.1) AT4G33820 188 / 4e-51 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007242 [exp] 1511 / 0 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 1008 / 0 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 1001 / 0 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10037528 [exp] 968 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10011465 [exp] 546 / 4e-180 AT1G10050 807 / 0.0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10025054 [exp] 277 / 7e-84 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 222 / 2e-63 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 201 / 1e-55 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 199 / 1e-54 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113066 [exp] 1106 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 1050 / 0 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.004G173300 [exp] 268 / 4e-80 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 213 / 4e-60 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 212 / 9e-60 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 200 / 1e-55 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.009G087900 [exp] 197 / 3e-54 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10028242 pacid=23166404 polypeptide=Lus10028242 locus=Lus10028242.g ID=Lus10028242.BGIv1.0 annot-version=v1.0 ATGGCTAAACACTTGGCTTTCTCTGCCTCCATTGCTCTTTCTCTCATGTTCCCCTTTTTGCTTCCAAATCTTACTGCTTCTGCTTCTTATGTTGATGGTC GGTCGATTCTGGGACCTTATTCACGGCACCACCACCACCAGGCAAAACATGCAGGGGTTGGTGCTGCTGTGAATGATGATAACATTATACTGAATCCCAG ATTTGAGGAAGGACTTAAGAATTGGTCTGCCAAAGGGTGCAGGATTGAGGTACATGAATCAATGGGTGATGGGAAAATCGTGCCTCAATTGGGGAAATTA TTTGTTTCAGCAACACAACGAACAGCAACATGGAATGGAATTGAGCAGGAGATCACTGGACGTGTACAGCGAGAAGTTCCTTATGCGGTCACTGCAGTAG CTAGGATATATGGCAACAATGTCAGTGCTGCTACTTTACAACTCACTCTTTGGGTTCAAGAGCAAGATCTTCGTGAACAATATGTAGCTATTTGCAGCTT GCAGGCGACAGACAAGGATTGGATGCAACTGCATGGGGAATTTCTTCTTAATAGTTTACCATCAAGAGCGATTATTTTCATTGAAGGCCCACCGGCTGGA ACCGATATTCTTATAAATAGTTTGATTGTGCAGCACGCACCAAAAATGCCTTCCTCACCACGACCAGTTTTCCAGGATCCGCCGTTTTTCATGAATGTGA TTGAGAACAGCAATCTTGAGGATGGAACCTCCAGTAGCTGGTTTGCGTTGGGAAACTGCTCTCTGAGTGTTGAAAGTGGTTCTCCGTACATTCTCCCACC AATGGCGAAAGATTCGCTTCGGTCACACGACTCTCTTAGTGGTAAGTATCTCCGTGTAACGAATCGATCGCAGTCTTGGATGGGCCCTGCGCAGATAGTG ACTGACAAGCTCACAGTGTACTTGACTTATCAAGTATCGGCATGGGTGCGAATTGGCCCTGGAGCAACTGGTAGTCAGATTGTGAATGCTGCATTAGGAG TTGATGGTGATTGGATCAATGGGGGTGAAGTTGAGGTGAATGATGGGAACTGGCATGAGATTGGAGGGACATTCAGGCTTGAGAAGCAGCCATCTAACGT TATGGTTTATGTCCAAGGTCCTGCCTCAGGTGTTGATTTAATGGTTGCTGGGTTTCAAATTTTTGCTGTAAATAGGGAGGCAAGGTATAGCTATTTGAAG AAGCAAACTGATAAGATACGCAAACGAGATGTCGTTTTGAAATTTCCAGCAGCTGGTCTTAATAACATCAGTTATATTAAAGTGAAACAGACACAAAATA GTTTTCCTCTGGGGTCATGCATAACGAGAACAAGCTTGGACAATGACAAGTTTGTCAATTTTTTGCTGGACAACTTCAACTGGGTTGTTTTCGAAAACGA AATGAAGTGGTCATGGACAGAACCACAACAAGGTAAATTCAACTACAAGGAAGCTGATGATATGTTGGAATTCTGCAGAACCCACAACCTGAAAGTCAGA GGTCACTGCATCTTCTGGGAAGTGGAGTCAAGAATCCAGCCGTGGGTACGATCTCTTAACGAAACTAGCTTAAAGAATGCGGTTCAGAATCGACTAAACG ACCTTCTCACACGTTACAAGGGGAAACCAAATCACTATGACGTAAACAACGAGATGCTCCATGGATCTTTCTATCAAGACAGATTGGGATATGATATACG AGCCGACATGTTCAGAACAGCCCACCAGCTTGACCCATCAGCAACCCTTTTCGTGAATGACTATCACATTGAGGATGGAAACGACGTGCATTCAACACCG GAGATGTACACGAGACAAGTCCTTGATCTCCGAGAGCAAGGTGCCGAGATTGGGGGGATTGGTGTCCAAGGACATATTGAAGTTCCAGTGGGGACTATAG TTTCTTCCGCATTTGATAAACTCGGAACTCTTGGACTTCCCATCTGGGTAACAGAGCTTGACGTGTCTTCTGTGAATGAGTTTATCAGAGCGGACGATCT CGAAGTAATTCTGCGAGAAGCTTTTGCCCATCCTGCTGTAGAAGGTGTGGTCCTTTGGGGTTTCTGGGAGCTATACATGTCCAGGAAAAATGCACATTTA GTAGATGCAAGTGGCGAGATAAACCAAGCTGGGAAAAGATTTCTGTCTCTTAAGAAAGAATGGTTGTCTGAGGCCAAAGGCAGCATCAACGACAAGGGAG AGTTCAGATTCAGAGGCTTTCATGGGACTTACGACGTTCAAATTGTGTCATCAACGACACAGACCATAAACAAGACATTCGTTGTCGATAAAGGACATTC GCCACTGGTCGTGCCCATCGACCTATAG
AA sequence Show only first row Show all	>Lus10028242 pacid=23166404 polypeptide=Lus10028242 locus=Lus10028242.g ID=Lus10028242.BGIv1.0 annot-version=v1.0 MAKHLAFSASIALSLMFPFLLPNLTASASYVDGRSILGPYSRHHHHQAKHAGVGAAVNDDNIILNPRFEEGLKNWSAKGCRIEVHESMGDGKIVPQLGKL FVSATQRTATWNGIEQEITGRVQREVPYAVTAVARIYGNNVSAATLQLTLWVQEQDLREQYVAICSLQATDKDWMQLHGEFLLNSLPSRAIIFIEGPPAG TDILINSLIVQHAPKMPSSPRPVFQDPPFFMNVIENSNLEDGTSSSWFALGNCSLSVESGSPYILPPMAKDSLRSHDSLSGKYLRVTNRSQSWMGPAQIV TDKLTVYLTYQVSAWVRIGPGATGSQIVNAALGVDGDWINGGEVEVNDGNWHEIGGTFRLEKQPSNVMVYVQGPASGVDLMVAGFQIFAVNREARYSYLK KQTDKIRKRDVVLKFPAAGLNNISYIKVKQTQNSFPLGSCITRTSLDNDKFVNFLLDNFNWVVFENEMKWSWTEPQQGKFNYKEADDMLEFCRTHNLKVR GHCIFWEVESRIQPWVRSLNETSLKNAVQNRLNDLLTRYKGKPNHYDVNNEMLHGSFYQDRLGYDIRADMFRTAHQLDPSATLFVNDYHIEDGNDVHSTP EMYTRQVLDLREQGAEIGGIGVQGHIEVPVGTIVSSAFDKLGTLGLPIWVTELDVSSVNEFIRADDLEVILREAFAHPAVEGVVLWGFWELYMSRKNAHL VDASGEINQAGKRFLSLKKEWLSEAKGSINDKGEFRFRGFHGTYDVQIVSSTTQTINKTFVVDKGHSPLVVPIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	0	1
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037322 [exp]	1.0	0.9700
AT1G65900			unknown protein		Lus10007381 [exp]	2.4	0.9665
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	3.0	0.9640
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10023695 [exp]	7.3	0.9344
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	7.5	0.9570
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	7.7	0.9562
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	8.4	0.9603
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	8.8	0.9559
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	9.2	0.9631
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Lus10035411 [exp]	11.0	0.9484

Compare expression of checked genes

Lus10028242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.