Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58370 1249 / 0 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G10050 1178 / 0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G08160 998 / 0 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT4G38650 239 / 6e-68 Glycosyl hydrolase family 10 protein (.1) AT4G33830 209 / 1e-57 Glycosyl hydrolase family 10 protein (.1) AT4G38300 195 / 9e-56 glycosyl hydrolase family 10 protein (.1) AT4G33840 199 / 6e-54 Glycosyl hydrolase family 10 protein (.1) AT4G33860 194 / 2e-52 Glycosyl hydrolase family 10 protein (.1) AT4G33820 184 / 4e-49 Glycosyl hydrolase superfamily protein (.1) AT4G33810 179 / 1e-47 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007243 [exp] 2192 / 0 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10037528 [exp] 1271 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10011465 [exp] 1223 / 0 AT1G10050 807 / 0.0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007242 [exp] 991 / 0 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 973 / 0 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10025054 [exp] 273 / 4e-80 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 218 / 5e-61 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 195 / 1e-52 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 189 / 2e-50 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113132 [exp] 1386 / 0 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 1053 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.004G173300 [exp] 239 / 7e-68 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 216 / 8e-60 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 206 / 2e-56 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 188 / 3e-50 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 183 / 8e-49 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10028243 pacid=23166565 polypeptide=Lus10028243 locus=Lus10028243.g ID=Lus10028243.BGIv1.0 annot-version=v1.0 ATGAGGAGGATCACAGTCTGCTGCTTCACCAGTCAATCACCAAAGAAAAATCGCAAGAAGACGAAGCAAATTCAGGAAGCCAAACCATCAACAGAGGAAA GCATGGAGCGACCCCAAATGAAGAAGAATGACATTGGCGGCGCTGGTAGCTCCGAGACTGCGGATGACAGCATGGGAAACTTAACCAACAGCATCCATTT TCCAGAACATCCTAAAAGGAATATCATCGTGAACCATGACTTTTCTCAAGGGCTACAATCCTGGCATCCAAATTCTTGTGATGGATTTGTGGTTTCATCA AACCCAGACCGCCCAGGACTTTTACCAAGACTAGTAGGTGGTTATGCAGTTGTTTCCAACCGGAAACAATGGTGGGAAGGGATTGAGCAAGATATCACTG CCAGGATCTCTCCAGGCTTAGTTTACTCAGTTGCTGCCGTTGTTGGAGTATCAGGAAACATTCAGGGATCAACTGAGGTCATTGCTACCCTAAAACTTGA GCAGCAAGGAACAGGAATCCAATACTTACGTGTCGGAAAAGCTACAGTGTCGAAGGGGCAACTCGAGATGCTGCAAGGCAATTTCTGCTTGTCAACTATT CCTGACCGGGTGGTCTTCTACATCGAGGGACCTTCTGCTGGAGCAGACATCCTAGTAGCTTCAGTCAACGTTTGCTCTTCTGGACCTGCAATCAATGATG TGTTGGATGAAAAGCATAGAAATGTGAGCACCAATATTATACTAAACAGCGACTTCTCTCAAGCACTGGAGTCATGGCACCCAAACAACTGTGACGGCTA TGTAGTCTCGATAGACTTGGGTCACCCAGGACGACATTTAGTCGATGAAGTTGGAAGTTATGCAGTTGTCTCAAACAGAAAAGAAAGGTGGCAGGGACTG GAACAGGATATCACAAGCAAGGTTTCCCCTGGCCTAACATACTTGGTTTCTGCCTTTGTTGGAGTATCTGGGCAGATTCAAGGATCATCCGAGGAGATTA TCGCAACTTTAAAATGTGAATACCAAGGCTCAGCAACAAGCTATCTTCTTGTTGGAAAAACCTCTGTATGCAAGGGGAAATGGAAAAAGTTGGAAGGAAG ATTCTCTTTGTCGAATATGCCTGAACGCGTGGTGTTTTACATCGAGGGGCCACCTCCCGGAGTGAACCTCCTCATAAAATCTGTATTAATTGGCAACTCC ATGTGTGAGAGGGCCGGTCATGGAAGTTCTGCAAATGAAGATGAGAACCTCATAGTGAATCCAAACTTTGAGGATGGATCAAACAACTGGTCCGGAAGAG GGGGGTGCAAGATTGCAGTACAAAATTCGGCAGCAGATGGGAAAATCGTACCTCAGTCTGGCAAATTCTTTGCAGTAGCAACAGGACGTACGCAGAGCTG GCATGGAATTCAGCAGGAAATCACAGGGAGAGTGCAGAGGAAGCTTGCATACGAAGTCAATGCTATAGTCCGCATTTACGGCAACAATGTCACGAGTGCT GATGTACGAGCTACTTTGTGGGTGCAAAATCCTGATAACCGAGAACAATATATCGGCATTGCCAATCTTCAGGCCAATGACTCAGATTGGATACAGCTGC AGGGGAAGTTCCTTTTGAATGGCTCTCCTAAAAAGATAGTTGTATATCTAGAAGGTCCACCTCCAGGGACTGATATTCTCGTAAATAGCTTCACTCTCAA ACATGCACAGAAAGTCCCTCCTTCACCTCTTCCAATAATTGAGAATCCGGCGTTTGGAGTGAACATACTTGAGAACAGCAATTTGAGCGATGGAACCAAT GGGTGGTTTCCTCTGGGGAATTGTTCTCTAAGTGTGGCAACTGGTTCACCTCATGTACTTCCTCCAATGGCAAGAGAATCTCTTGGAGTTCATGAACCTT TAAGTGGACGATGCATAGCTGTCACGAAAAGGACACAAACATGGATGGGACCTGCACAGATGATCACAGACAAAGTCAAGCTCTTCTTGACATACCAGAT AGCTGCTTGGGTTAAGATTGGCCCTACTGGAGCCAATAGTGGACCACAAAATGTGAATGTGGCACTTGGTGTAGACAATAATTGGGTCAATGGAGGACAA GTCGAGATCAACGATGATCGATGGCACGAAATCGGTAGCTCCTTCAGAATCGAGAAGCAACCTTCTAAGGTCATGGTTTACATACAAGGTCCTGCTGGGG GAACAGACTTCATGGTTGGCGGTCTTCAAATTTTTCCTGTTGACCGAGTCGCAAGATTCAAGCATTTGAGAAGGCTTACTGACAAGATCCGAAAACGTGA TGTGACCCTGAAATTCACAGGAGCAGATTCAAGCAGCTTGCATGGTACATTGGTGAAAGTTCGCCAAACTCAGAATAGTTTTCCCTTGGGGACATGCATA AGCCGCACCAACATTGATAACGAAGACTACGTAAACTTCTTCGTAAATAATTTCAACTGGGCAGTGTTTGGGAATGAGCTGAAATGGTACTGGACAGAGT CACAGCAAGGAAGTCTTAACTACAAGGACGCTGACGACATGGTGGAGTTGTGCAAGAGTCATAACATAGAAATGCGCGGACATTGCATTTTCTGGGATGT GGACGGTACAGTCCAACAATGGATCAAGTCCTTGAACAAAGATGACTTGATGAAAGCTGTACAAAACCGTCTTACAGATCTCCTCACCAGATACAAAGGA AAATTCAAACATTATGATGTGAATAACGAGATGTTGCATGGATCGTTCTATCCAGACCGGTTGGGGAAAGACATCCGACCATACATGTTCAAGACAGCGA ATCAGCTCGATCCATCCGCAACCCTTTTCGTGAATGACTATCACGTTGAAGATGGATGTGATACAAGGTCAAATCCTGAAAGGTACATTGAACATATTCT GAACTTGCAGGAACAAGGTGCACCAGTTGGAGGGGTTGGAATTCAAGGGCACATTGATAGTCCAGTTGGGCCAGTGGTTTGTTCAGCTCTGAATAACCTT GGAATCCTTGGTCTTCCGATCTGGTTTACAGAGCTGGATGTTTCCTCCGTGAATGAGTACATTCGAGCGGAGGATTTGGAAGTGATGCTACGTGAGGCCT ATGCACACCCTTCGGTGGAAGGGATTATGCTGTGGGGGTTCTGGGAGTTGTTTATGAGCAGAGAGAATTCACATTTGGTGGATGCTGAAGGGGAGTTGAA TGAAGCTGGGAGGAGATTCTTGGCACTGAAGAAAGAGTGGCTGTCTCATGCTAGTGGCCACGTTGATGAGCATCACATTGATGAGCAGGCTGGGTTTGGA TTCAGAGGGTTTCATGGGACTTACACTGTGGAGATTGTTGGCCGCTCCAAAAAAGTTACGAAAACATTTGTGGTTGAAAAGGGTGACACTCCGCTTGTTC TTTCCATTGATCTCTCAAGCTCTTAA
AA sequence Show only first row Show all	>Lus10028243 pacid=23166565 polypeptide=Lus10028243 locus=Lus10028243.g ID=Lus10028243.BGIv1.0 annot-version=v1.0 MRRITVCCFTSQSPKKNRKKTKQIQEAKPSTEESMERPQMKKNDIGGAGSSETADDSMGNLTNSIHFPEHPKRNIIVNHDFSQGLQSWHPNSCDGFVVSS NPDRPGLLPRLVGGYAVVSNRKQWWEGIEQDITARISPGLVYSVAAVVGVSGNIQGSTEVIATLKLEQQGTGIQYLRVGKATVSKGQLEMLQGNFCLSTI PDRVVFYIEGPSAGADILVASVNVCSSGPAINDVLDEKHRNVSTNIILNSDFSQALESWHPNNCDGYVVSIDLGHPGRHLVDEVGSYAVVSNRKERWQGL EQDITSKVSPGLTYLVSAFVGVSGQIQGSSEEIIATLKCEYQGSATSYLLVGKTSVCKGKWKKLEGRFSLSNMPERVVFYIEGPPPGVNLLIKSVLIGNS MCERAGHGSSANEDENLIVNPNFEDGSNNWSGRGGCKIAVQNSAADGKIVPQSGKFFAVATGRTQSWHGIQQEITGRVQRKLAYEVNAIVRIYGNNVTSA DVRATLWVQNPDNREQYIGIANLQANDSDWIQLQGKFLLNGSPKKIVVYLEGPPPGTDILVNSFTLKHAQKVPPSPLPIIENPAFGVNILENSNLSDGTN GWFPLGNCSLSVATGSPHVLPPMARESLGVHEPLSGRCIAVTKRTQTWMGPAQMITDKVKLFLTYQIAAWVKIGPTGANSGPQNVNVALGVDNNWVNGGQ VEINDDRWHEIGSSFRIEKQPSKVMVYIQGPAGGTDFMVGGLQIFPVDRVARFKHLRRLTDKIRKRDVTLKFTGADSSSLHGTLVKVRQTQNSFPLGTCI SRTNIDNEDYVNFFVNNFNWAVFGNELKWYWTESQQGSLNYKDADDMVELCKSHNIEMRGHCIFWDVDGTVQQWIKSLNKDDLMKAVQNRLTDLLTRYKG KFKHYDVNNEMLHGSFYPDRLGKDIRPYMFKTANQLDPSATLFVNDYHVEDGCDTRSNPERYIEHILNLQEQGAPVGGVGIQGHIDSPVGPVVCSALNNL GILGLPIWFTELDVSSVNEYIRAEDLEVMLREAYAHPSVEGIMLWGFWELFMSRENSHLVDAEGELNEAGRRFLALKKEWLSHASGHVDEHHIDEQAGFG FRGFHGTYTVEIVGRSKKVTKTFVVEKGDTPLVLSIDLSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	0	1
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	1.0	0.9924
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	1.4	0.9877
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	2.0	0.9846
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	2.4	0.9723
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	3.0	0.9857
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	3.7	0.9696
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	4.0	0.9654
					Lus10028069 [exp]	5.5	0.9627
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	7.4	0.9757
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	7.4	0.9619

Compare expression of checked genes

Lus10028243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.