Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08150 296 / 1e-98 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 193 / 9e-59 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT1G23380 167 / 3e-49 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 163 / 4e-48 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT5G25220 81 / 4e-17 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT1G62990 74 / 5e-15 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G11060 74 / 9e-15 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 72 / 5e-14 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G75430 61 / 2e-10 HD BLH11 BEL1-like homeodomain 11 (.1) AT1G19700 61 / 4e-10 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007245 [exp] 240 / 4e-80 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10030003 [exp] 193 / 1e-58 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10013037 [exp] 179 / 9e-54 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 176 / 1e-52 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 138 / 1e-37 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10042102 [exp] 110 / 1e-29 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001941 [exp] 77 / 2e-15 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10017824 [exp] 74 / 2e-15 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10024485 [exp] 74 / 6e-15 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113300 [exp] 317 / 3e-107 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.011G011101 [exp] 196 / 5e-60 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 196 / 7e-60 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 195 / 1e-59 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.012G087100 [exp] 185 / 6e-56 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 181 / 1e-54 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 181 / 2e-54 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 178 / 7e-54 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 153 / 4e-44 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 153 / 5e-44 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10028244 pacid=23166487 polypeptide=Lus10028244 locus=Lus10028244.g ID=Lus10028244.BGIv1.0 annot-version=v1.0 ATGTTTGGCTACTGCTCACCGCTGGAAGGTATTCTTGGTTCAAAGTCCAGAAGATTGCCGGTATCAAATAAACTGACGGCCGACAATCCTGAAATTTACG GTGACATCATTAAATGTGGTGGCTGTGCCGCTGGGAGGGGTTTGGTGTGCACGCAGACGCAGGCAGGCTCCAGAGTCCAGAGTGGCAGTCCTCTGTTTCC ACCATCCAACACGGTGGGAGCTCCGGCGGAAGTGGTGGCGAGGCTGGCAGCTGCGCGGCAGGAGTTTGAATCCAGGCAGAGATCCTCAATCCACGGCCAG ATGAACAACAACACTGCTAAAGACCCCGAGCTTGATCAGTTCATGGAGGCTTACTACGACATGCTGGTGAAGTACAGGGAGGAGCTAACGAGGCCGATAC AGGAAGCAATGGAGTTCATGCGCCGCGTCGAAACCCAGCTCAATCTCATCTCCACCGTTCCCCTTCGCGTTTTCAACTCTGACGACAAGTCGGAAGGGAT GGGAGGTTCGTCGGAAGAGGAGCAGGAGAACAGCGGGGGAGAAACAGAACTCCCCGAGATCGATCCAAGAGCCGAAGACAGGGAGCTGAAGAACCACTTG TTGAGGAAGTACAGTGGATACCTGAGCAGCTTGAAGCAAGAACTGTCCAAGAAGAAGAAGAAAGGCAAGCTCCCTAAAGAAGCCAGGCAGAAGCTACTCA GTTGGTGGGAACTTCACTACAAGTGGCCTTATCCTTCGGAGTCGGAGAAAGTGGCATTGGCGGAGACAACAGGGTTAGACCAGAAGCAGATAAACAATTG GTTCATAAACCAGAGGAAAAGGCACTGGAAACCATCTGAAGACATGCAGTTCATGGTCATGGATGGTCTTCACCACCCAGCTCAGAACCCTGCTGCTGCT CTCTACATGGATGCTCATCATTACATGCCCGATGGTCCTTACCGTTTAGGCCCTTAA
AA sequence Show only first row Show all	>Lus10028244 pacid=23166487 polypeptide=Lus10028244 locus=Lus10028244.g ID=Lus10028244.BGIv1.0 annot-version=v1.0 MFGYCSPLEGILGSKSRRLPVSNKLTADNPEIYGDIIKCGGCAAGRGLVCTQTQAGSRVQSGSPLFPPSNTVGAPAEVVARLAAARQEFESRQRSSIHGQ MNNNTAKDPELDQFMEAYYDMLVKYREELTRPIQEAMEFMRRVETQLNLISTVPLRVFNSDDKSEGMGGSSEEEQENSGGETELPEIDPRAEDRELKNHL LRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHHPAQNPAAA LYMDAHHYMPDGPYRLGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	0	1
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10007245 [exp]	1.0	0.9192
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	2.8	0.8803
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	3.5	0.8645
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	4.5	0.8633
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	8.0	0.8327
AT4G21500			unknown protein		Lus10011256 [exp]	10.6	0.8389
AT4G40042			Microsomal signal peptidase 12...		Lus10011365 [exp]	12.2	0.8172
AT3G57400			unknown protein		Lus10042067 [exp]	12.4	0.8147
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	14.5	0.8503
					Lus10028522 [exp]	14.8	0.8551

Compare expression of checked genes

Lus10028244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.