Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10070 451 / 6e-156 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT5G65780 410 / 4e-139 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G10060 399 / 3e-135 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G49680 398 / 1e-134 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT1G50090 395 / 3e-134 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50110 391 / 9e-133 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G19710 344 / 2e-114 BCAT4 branched-chain aminotransferase4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032806 [exp] 462 / 4e-161 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10011567 [exp] 400 / 2e-135 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 396 / 7e-134 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 393 / 9e-133 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10007247 [exp] 384 / 4e-129 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 361 / 1e-121 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 293 / 1e-95 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113600 [exp] 442 / 2e-152 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.007G008000 [exp] 426 / 1e-145 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.009G082600 [exp] 384 / 2e-129 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 370 / 5e-124 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10028246 pacid=23166480 polypeptide=Lus10028246 locus=Lus10028246.g ID=Lus10028246.BGIv1.0 annot-version=v1.0 ATGACTGCTACAAACTGGGACAAGCTCGGATTTGATCCCTTATCAACAGACTATATGTATGTGATGAAGTGTTCTGGAGGTGATACATTTTCAGATGGGC AGTTGCTATCATTTGGGAAGATTGAGTTGAATCCTTTCTCTTCTGTATTGAATTATGGAAAGGGAATAATTGAAGGGCTGAAAGCACACAAGAAAGCAGA TGACTCTGTACTACTGTTTCGACCAGAGGAAAATGCCTTGCGAATGGCTAAGGGAGCTGATCGATTATGCATGGTTGCACCAACTGTTGAACAATTTGTG GAGGCTGTGAAAATTCCACCTCTGAATAAAGGCTTTTTGCACATCCGTCCGTTGCTTCTAGGGACTAGCTCTTCTCTTAGTCTAACTCCCGCTTCCGAGT TTATGCTTCTTATATATGTTACCCCCATCGGGAGCTATTTCGAGAGTAGTTTGGAGCCAATTAACCTGTTGATTGATGATGAAACACATCGAGCTGTTCC AGGTGGGGTTGGATGTATAAAGGCTATAGGGAACTATGCTGGGATTTTGAAGGCTCATGCTAATGCCAAGAGAAATGGTTTCAATGATGTTTTATATGTT GATTCAGTCTATAACAGATACTTGGAAGAAGTTTCCACTGCTAATATCTTTGTTGTAAAGTGTAGAGGCTACTCACGTTACTACACTTCAAGGGCTGCAA CTTTTGTAGAAGAAATCTGTGAACCCTCACCTTCATCCAGTGACGAGGATGCTGATAGGGATTGGGACAACTTGGGATTCGGTCTTGTCACAACTGATTA TATGTATGTGATGAAATGCGGTAAAGATGGAAACTTTGCGCAAGGGGAACTCAACCCATATGGAAACATTGAGCTGAGCCCTTGTGCAGGAGTCTTAAAT TATGGACAGGGACTGTTTGAAGGCACAAAAGCTTACAGAAAAGAGGACGGCAGGCTACATCTGTTCCGGCCAGATGAAAATGCGATTAGGATGATCAATG GTGCAGAGAGAATGTGTATGCCTTGTCCTTCGGTTCACCAATTTGTTGATTCTGTTAAACAAACAGCTCTAGCCAACAAGCGCTGGATTCCGCCTCCTGG GAAAGGGGCATTGTACATTAGGCCATTGCTGCTTGGAACTGGACCTGTATTGGGTTTGGCTCCTGCACCTGAATACACTTTCCTTGTATATGCTTCCCCT GTAGGCAACTACTTCAAGGGGGCTGAAGCCTTGAAGTTGTACGTTGAGGAAGAGTACCATCGAGCATCTAGTCTGGGAACCGGAGGAGTGAAAACAATAA GCAACTATGGCCCTGTTCTGAAAGCTCTGAGCAAAGCCAAAAGCAGGGGATTTTCCGATGTCATTTATCTCGACTCTGTGGAGAACAAGTACCTGGAGGA AGCCTCAGCCTGCAACATTTTCATCCTCAAGGGAAAAGTGATTTCAACCCCTGCCACTAGAGGAACCATTCTTCCAGGTGTTGAGGAGCGTCTGGTTCCA GTGGATGAACTATTAGATGCTGACGAGGTTTTCTGCACTGGGACAGCTGTTGTTGTTGCTCCTGTAGGCAGCGTTACGTATCGAAATCAAAGGGTCCAAT ACAGGACGGGGGTTGAATCAGTGACTTGGCAGTTGCACTCTACGTTGGTAGGGATTCAGAGTGGTGTGGTTGAAGACAAGAAAGGATGGACTGTCCAGAT TAATTGA
AA sequence Show only first row Show all	>Lus10028246 pacid=23166480 polypeptide=Lus10028246 locus=Lus10028246.g ID=Lus10028246.BGIv1.0 annot-version=v1.0 MTATNWDKLGFDPLSTDYMYVMKCSGGDTFSDGQLLSFGKIELNPFSSVLNYGKGIIEGLKAHKKADDSVLLFRPEENALRMAKGADRLCMVAPTVEQFV EAVKIPPLNKGFLHIRPLLLGTSSSLSLTPASEFMLLIYVTPIGSYFESSLEPINLLIDDETHRAVPGGVGCIKAIGNYAGILKAHANAKRNGFNDVLYV DSVYNRYLEEVSTANIFVVKCRGYSRYYTSRAATFVEEICEPSPSSSDEDADRDWDNLGFGLVTTDYMYVMKCGKDGNFAQGELNPYGNIELSPCAGVLN YGQGLFEGTKAYRKEDGRLHLFRPDENAIRMINGAERMCMPCPSVHQFVDSVKQTALANKRWIPPPGKGALYIRPLLLGTGPVLGLAPAPEYTFLVYASP VGNYFKGAEALKLYVEEEYHRASSLGTGGVKTISNYGPVLKALSKAKSRGFSDVIYLDSVENKYLEEASACNIFILKGKVISTPATRGTILPGVEERLVP VDELLDADEVFCTGTAVVVAPVGSVTYRNQRVQYRTGVESVTWQLHSTLVGIQSGVVEDKKGWTVQIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028246 [exp]	0	1
AT5G27830			unknown protein		Lus10029881 [exp]	2.4	0.9558
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	6.0	0.9471
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	6.3	0.9529
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10020566 [exp]	6.6	0.9293
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10015625 [exp]	6.7	0.9341
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	7.7	0.9449
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	8.1	0.9449
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	10.5	0.9486
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	11.0	0.9263
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	11.6	0.9170

Compare expression of checked genes

Lus10028246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.