Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 166 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 131 / 5e-38 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 124 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 111 / 5e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 72 / 3e-15 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 67 / 3e-13 RING/U-box superfamily protein (.1) AT5G60580 64 / 6e-12 RING/U-box superfamily protein (.1.2.3.4) AT3G06330 56 / 2e-09 RING/U-box superfamily protein (.1.2.3) AT3G09760 56 / 4e-09 RING/U-box superfamily protein (.1) AT5G03180 56 / 4e-09 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040240 [exp] 289 / 7e-100 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 170 / 9e-53 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 166 / 5e-52 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 149 / 9e-45 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 146 / 2e-43 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 123 / 5e-35 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 122 / 7e-35 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 104 / 1e-26 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 99 / 5e-25 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195100 [exp] 183 / 1e-58 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 176 / 8e-56 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 164 / 1e-50 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 162 / 4e-50 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 128 / 4e-37 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 122 / 6e-35 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 91 / 2e-21 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 85 / 3e-19 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G452800 [exp] 66 / 6e-13 AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1) Potri.006G024000 [exp] 65 / 5e-12 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10028249 pacid=23166491 polypeptide=Lus10028249 locus=Lus10028249.g ID=Lus10028249.BGIv1.0 annot-version=v1.0 ATGGAGTCTGCCGCTTCCCAAAAACCCCACTTGGCCGTTAGTGCATCTGCCGGCGACAAGGAAGCAATCAACGTCAGCCACCGTGTAGAGGAAGAGGGGG GAGAGAAAGATGAGAGCTTTTCCAGTGATGAGTCAGAGTTGGATCTGGAGCTTGGACTTGTAGTTGATAATAATAATGAGATTAGCGATGATGAAGATGA AGATGGTGATGATAAGGAGGTGGTGCATTTGAGTAATGTTGAGATTATTAGGGATTGTAGGATTTGTCACATGAGCTTGGATGAAGAGTCTGGTGGTGGG CTCCCTATTGACTTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTTCCCATAGACATTGTGCTGAAGCTTGGTTCAAGATCAAGGGTAACAAAACCTGCG AGATATGTGGATCGGTGGCACGAAACGTGGCCGGTCCAACTGAACCAGAGACGAATATGGAGCAATGGAGTGATCAGGGCAATGACCAGGCGATTGTGGC ATCATCATCTGGAGCAGCAGTAGGAAATTCACAAGCTGATCAGTCTAACACAACTAGACACTTTTGGCAGGGACATCGCTTCCTCAACTTCCTACTGGCA TGTATGGTATTTGCTTTTGTCATCTCTTGGCTCTTCCACTTCAATGTCCCTTCGTAG
AA sequence Show only first row Show all	>Lus10028249 pacid=23166491 polypeptide=Lus10028249 locus=Lus10028249.g ID=Lus10028249.BGIv1.0 annot-version=v1.0 MESAASQKPHLAVSASAGDKEAINVSHRVEEEGGEKDESFSSDESELDLELGLVVDNNNEISDDEDEDGDDKEVVHLSNVEIIRDCRICHMSLDEESGGG LPIDLGCSCKDDLAASHRHCAEAWFKIKGNKTCEICGSVARNVAGPTEPETNMEQWSDQGNDQAIVASSSGAAVGNSQADQSNTTRHFWQGHRFLNFLLA CMVFAFVISWLFHFNVPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	0	1
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10011119 [exp]	1.7	0.8418
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	3.9	0.8260
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	3.9	0.8062
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	5.2	0.8305
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	5.5	0.8392
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	6.5	0.7975
AT5G10310			unknown protein		Lus10025740 [exp]	6.9	0.8192
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	8.6	0.7799
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	8.8	0.8099
AT5G27990			Pre-rRNA-processing protein TS...		Lus10005806 [exp]	9.5	0.8012

Compare expression of checked genes

Lus10028249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.