Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51740 366 / 6e-128 ATSYP81, SYP81, ATUFE1 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040237 [exp] 488 / 2e-174 AT1G51740 439 / 2e-154 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194300 [exp] 426 / 2e-151 AT1G51740 424 / 1e-150 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1) Potri.008G063100 [exp] 410 / 3e-145 AT1G51740 409 / 2e-144 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10496 [flax] [poplar] Syntaxin-18_N SNARE-complex protein Syntaxin-18 N-terminus
Representative CDS sequence Show only first row Show all	>Lus10028252 pacid=23166428 polypeptide=Lus10028252 locus=Lus10028252.g ID=Lus10028252.BGIv1.0 annot-version=v1.0 ATGGCGAAATTTAGGGACAGGACGGAGGATTTCAAAGATGCGGTGAGGCATTCAGCTATCTCTGCAGGATATGACGAGTTGGAAAGCATAGGAGCTTTAG AACAGTTCATGTTGAAGCATCGAAAGGATTATGTTGATATGCACCGTACCACTGAGCAGGAAAGAGATAGCATTGAACAAGAGGTTGCCGAGTTCATCAA AGCATGCAAAGAACAAATCGACATTCTTAAAAATAGCATAAACAACGAAGAAACAAATGCAAAAGGATGGCTTGGTATCAGGGTTGATAACTCCAATGTT GATACTATAGCACACAAACATGGTGTGGTACTGATTCTGAGTGAGAAACTTCATGCTGTTACATCACAATTTGATAAATTAAGGGCCATAAGGTTCCAAG ATGCTATAAATAAAAGGATGCCAAGAAGAAAACAAAAGAGAGTAGCAATTTCAAGCTCAGTGGATCCATCTAAAATAGATAATCCAGATATGAAAGATCC TAATGTAACTCAGTTGGAGCCTCTTAGAGTTCAGCAACAATTATTGGATGATGAAACTCGTGCACTTCAGGTGGAGTTAACCAATCTCTTAGATGCAGCT CAACAAACTGAAACCAAGATGGTGGAAATGTCTGCCTTAAATCATCTCATGTCAACCCATGTTTTGCAGCAAGCACAACAAATAGAACATCTGTATGATC AGGCAGTGGAAGCAACGAAGAACGTTGAACTCGGTAACAAGGAACTGTCTCAAGCCATACAGAGGAATAGCAGTAGCAGGACATTTCTTGTGCTTTTTCT ATTTGTACTTACATTTTCAATCATTTTTCTTGATTGGTACAGCTGA
AA sequence Show only first row Show all	>Lus10028252 pacid=23166428 polypeptide=Lus10028252 locus=Lus10028252.g ID=Lus10028252.BGIv1.0 annot-version=v1.0 MAKFRDRTEDFKDAVRHSAISAGYDELESIGALEQFMLKHRKDYVDMHRTTEQERDSIEQEVAEFIKACKEQIDILKNSINNEETNAKGWLGIRVDNSNV DTIAHKHGVVLILSEKLHAVTSQFDKLRAIRFQDAINKRMPRRKQKRVAISSSVDPSKIDNPDMKDPNVTQLEPLRVQQQLLDDETRALQVELTNLLDAA QQTETKMVEMSALNHLMSTHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLVLFLFVLTFSIIFLDWYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	0	1
AT1G28100			unknown protein		Lus10001800 [exp]	4.1	0.7413
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	8.3	0.7156
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	18.2	0.6779
AT5G06440			unknown protein		Lus10013601 [exp]	18.2	0.6576
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	23.4	0.6652
AT1G05780			Vacuolar ATPase assembly integ...		Lus10018982 [exp]	23.5	0.6315
AT4G34660			SH3 domain-containing protein ...		Lus10028784 [exp]	30.3	0.6344
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	34.6	0.5984
AT2G31305		INH3	inhibitor-3 (.1)		Lus10022410 [exp]	38.3	0.6259
AT5G58005			Cytochrome c oxidase, subunit ...		Lus10036285 [exp]	41.1	0.6560

Compare expression of checked genes

Lus10028252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.