Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 575 / 0 O-fucosyltransferase family protein (.1) AT5G01100 558 / 0 O-fucosyltransferase family protein (.1) AT3G54100 552 / 0 O-fucosyltransferase family protein (.1) AT5G35570 531 / 0 O-fucosyltransferase family protein (.1) AT1G22460 417 / 4e-140 O-fucosyltransferase family protein (.1) AT5G64600 405 / 3e-136 O-fucosyltransferase family protein (.1) AT1G14020 401 / 1e-134 O-fucosyltransferase family protein (.1) AT5G15740 400 / 3e-134 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 385 / 2e-128 O-fucosyltransferase family protein (.1) AT2G03280 370 / 4e-123 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040236 [exp] 1043 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 565 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 565 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 563 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 562 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 533 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 527 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 401 / 2e-134 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 396 / 3e-132 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 569 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 564 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 541 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 429 / 2e-145 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 401 / 3e-134 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 394 / 9e-132 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 393 / 3e-131 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 387 / 3e-129 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 387 / 4e-129 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 380 / 1e-126 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028253 pacid=23166479 polypeptide=Lus10028253 locus=Lus10028253.g ID=Lus10028253.BGIv1.0 annot-version=v1.0 ATGACGGGAGCAGGAGAAACCTCATCATCCAACTCACCACACGTGATGACCCGGCGGCGAGTTGGGGACTGCCTAGAATCTCAAGAACATGTCGTCAACG AATGGTCAACTTCCGGCGGCGGCGGCGGCGGCGGAGAGACGAAGAGGTTGCTTCTCCGGCGGCCGGGGAGGAGGGGCATGTTCGGGGTTTTGTCGCTGAT GGTGTTCTTGACGATGCTAGCCAAATTCCCGCTGCTGCACAAGTTGCAGAGCTTGGATTCGGATCCAGTCATGACCGGCATTGTCGTCTCGGGTGCCGGT AATAATCTCGTGAACGAGACTTCTTCCTCTTCCGACGGCGGTGGTGGTGGGAAGTTACTCAATGCGCCGGAGAAGTTTTTGGTTCTGGACATTTGGGAGA AGCCCAGTAGCGACGGCTTTTACAGTTGCATTCACGAATCGAAAAGCGAAGAAATGAGAACGGTCACCACAAATGGATATCTAGAAGTTCATGCAAATGG CGGATTGAATCAAATGAAAGCAGGGATAAGTGATATGGTGGCCATAGCCCAGCTCATGAACGCCACGTTGGTTCTTCCTTCCCTCGACCACTCTTCTTAC TGGATGGACCCAAGTGGGTTCAAGGATATCTTCGACGTGGGGCACTTCATTCGAGTCCTGAAAGACGAAATCGACATCGTGGAAGCGATTCCCAAAGAGC TTGACGGGGTAATGCCATTGGAGAAGCCGCCGGTTTCTTGGTCCAAGGCTGCCTATTACAGAAACCAGATGGCTACTCTTCTGAGAAAGCACAAGATCAT CAGATTCACGCACTCGGATTCTCGCCTCGCCAACAATGGCCTCCCATCTTCGATTCAAAGACTCCGTTGCCGATCCATGTACGAGGCGCTTAAGTTCCAG GATGAAATTGCAGAGGTCGGCAGGAAGCTGGTCGAGAGGCTCAGAGGGGGAGGACAGCGTTTCATAGCTCTTCATTTGAGATACGAGAAGGACATGCTTG CTTTCACAGGATGCAGTCACAACCTTACGAAAATTGAGGGCGAAGAGCTATTAGCAATGAGGATGAACACGAGGCACTGGAAGCACAAACATATCAACAG CACGGCGAGACGATTGGAGGGGAACTGCCCGATGACCCCACGAGAAGTCGCTGTGTTCCTTCAAGCCATGGGGTTTCCTTACGATACACAGATTTACATA GTTGCAGGGGAAATCTACGGCGAGAATGGACTCAATGCACTCAAGGAGAAGTTCCCAAACGTACATACCCATTTCAGTCTGGCAACTGAGGAGGAGATGA TAAATCTCAGGAGCCGACAGAATCAGCTTGCGGCTATAGACTACATTGTGGCAATTGAGAGTGATGTTTTCGTCTACAGTTACGACGGTAATATGGCTAA AGTAGCCACGGGTCACCGCAGATTCGAAGGGTTCCGGAAGACCATCAGCCCTGACAAATACCATTTCGTAAGATTGATCGACAAGCTGGACGAGGGAATG ATACCTTGGGATAAATTTTCGTCAAAAGTGAAAGAGATGCATAAGAATAGGACTGGGGCTCCGTCTCATAGAAAGCCAGGCCGTTCGTCGAAGCATGAGG AGAGCTTTTACGCAAACCCTTTTCCGGGTTGTATCTGTGAAAGAACACCAGAAAACAAAAGATCTAGTGACCTAAGATAG
AA sequence Show only first row Show all	>Lus10028253 pacid=23166479 polypeptide=Lus10028253 locus=Lus10028253.g ID=Lus10028253.BGIv1.0 annot-version=v1.0 MTGAGETSSSNSPHVMTRRRVGDCLESQEHVVNEWSTSGGGGGGGETKRLLLRRPGRRGMFGVLSLMVFLTMLAKFPLLHKLQSLDSDPVMTGIVVSGAG NNLVNETSSSSDGGGGGKLLNAPEKFLVLDIWEKPSSDGFYSCIHESKSEEMRTVTTNGYLEVHANGGLNQMKAGISDMVAIAQLMNATLVLPSLDHSSY WMDPSGFKDIFDVGHFIRVLKDEIDIVEAIPKELDGVMPLEKPPVSWSKAAYYRNQMATLLRKHKIIRFTHSDSRLANNGLPSSIQRLRCRSMYEALKFQ DEIAEVGRKLVERLRGGGQRFIALHLRYEKDMLAFTGCSHNLTKIEGEELLAMRMNTRHWKHKHINSTARRLEGNCPMTPREVAVFLQAMGFPYDTQIYI VAGEIYGENGLNALKEKFPNVHTHFSLATEEEMINLRSRQNQLAAIDYIVAIESDVFVYSYDGNMAKVATGHRRFEGFRKTISPDKYHFVRLIDKLDEGM IPWDKFSSKVKEMHKNRTGAPSHRKPGRSSKHEESFYANPFPGCICERTPENKRSSDLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	2.0	0.7753
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	5.8	0.7197
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	8.2	0.7109
AT4G22390			F-box associated ubiquitinatio...		Lus10030826 [exp]	8.5	0.7506
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	9.3	0.7865
AT1G13570			F-box/RNI-like superfamily pro...		Lus10041818 [exp]	10.0	0.7544
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10025965 [exp]	10.4	0.6829
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	15.5	0.7518
AT1G33530			F-box family protein (.1)		Lus10014984 [exp]	16.3	0.7735
AT1G30710			FAD-binding Berberine family p...		Lus10038676 [exp]	18.3	0.6465

Compare expression of checked genes

Lus10028253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.