Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39910 251 / 7e-80 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040233 [exp] 532 / 0 AT2G39910 386 / 6e-129 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063500 [exp] 314 / 6e-104 AT2G39910 423 / 2e-145 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028256 pacid=23166572 polypeptide=Lus10028256 locus=Lus10028256.g ID=Lus10028256.BGIv1.0 annot-version=v1.0 ATGTCGAATTCCACTGAGCCTTACCATCGTCGGCTCACCGATTCACCGTACTCGCAACCTGAAGGCACACCCGTATCAGCCAAATCAATCCTCGAGTCTC TCCTCCGTAAACCTGCCGCCGTTACCACCGCTGTTACGGAACCACAGCTCCGCGAATCGATCAGGGACTTGGCTCTAGCATCCGCCTTGCTAGCCGCGTC CCAATCCTCCGTTCACGAGTTGCTCTCATGGATTCCCGGAGAGCTCGCCGATGCTGCTACTGCCGCTTTCCAGACTCTCGCCGTTATTTATCGCGAGAGA TACGATAAAAGTTTGGTCGTGGAATTGGCGCCGGAGGTATTGCTTCTGTTGAAGGACAAGATTAAGGAGAGCTCCATCGATAAAGGTACCGATGGAGATG AAGTCTCCGCCGCTTCGGCTAGGGTTCCGGTTGGTTTCGCGATTCTGGCTGCTTATAAGCTGAGGTGGTTCATTACGCAGATTGATCGTCCACATTTGGG GAAGCTGTGTAATTTGGTGATTCCTTGTGGATTGACTGCTCTTGATCATTGGTCAGCGGAGAACATTGCATCTGCTGACGAGATATGGCATCTTGCAGTG GAAATGTCAGTGCTTCTTGTGACCAGCATTCACCCTAGAAATCCTAGAAGCCATTGGTATGAGAGGATGCTAGGTGCTAAGTCACCTGGAGCGAGACTTT TCCCACTTTTCTTTAAGTGGATCCACGCTGACGATGATGAAACTGTTCTTCTGGTTCTAAAACGGGTGCATACAGTCCTGAGAGTAACATGGATAAGGAA CTCGCCATATATTGCACGATTGGTGGATGAGCTTGTTTCCTTGTACAAGGAAGCAGCATTGAAAGTGGCTCGTGAAGAGATTAGGACAAATATACTCGCC GTACTGTTCTTGCTGAAACAATGCAAGGGGAAGCTGTTCGAAACGGCATGGGAAAAGTACACAGATGATTCGAATCTCACAGCTCTGCAAATCACTTTGA CTGAGCTCACCATCAATGATGCAAGTTCCACCTTGAAGCGAGAAGACAGCACACAACTCAACCCTTGA
AA sequence Show only first row Show all	>Lus10028256 pacid=23166572 polypeptide=Lus10028256 locus=Lus10028256.g ID=Lus10028256.BGIv1.0 annot-version=v1.0 MSNSTEPYHRRLTDSPYSQPEGTPVSAKSILESLLRKPAAVTTAVTEPQLRESIRDLALASALLAASQSSVHELLSWIPGELADAATAAFQTLAVIYRER YDKSLVVELAPEVLLLLKDKIKESSIDKGTDGDEVSAASARVPVGFAILAAYKLRWFITQIDRPHLGKLCNLVIPCGLTALDHWSAENIASADEIWHLAV EMSVLLVTSIHPRNPRSHWYERMLGAKSPGARLFPLFFKWIHADDDETVLLVLKRVHTVLRVTWIRNSPYIARLVDELVSLYKEAALKVAREEIRTNILA VLFLLKQCKGKLFETAWEKYTDDSNLTALQITLTELTINDASSTLKREDSTQLNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39910			ARM repeat superfamily protein...		Lus10028256 [exp]	0	1
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	6.9	0.8503
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	7.3	0.8547
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	8.7	0.8480
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	13.1	0.8446
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	18.3	0.8235
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	20.3	0.8283
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	20.5	0.8401
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	21.0	0.8340
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	21.7	0.8428
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	23.5	0.8036

Compare expression of checked genes

Lus10028256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.